Cow genome map

Conread name: Lym1-jns23_A07.f

Conread position: 1-282
Cow position: chr24:14724806-14724509 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 52

Conread position: 2-493
Cow position: chr24:40257392-40257881 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 51

Conread position: 3-212
Cow position: chr24:16844220-16844421 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 85, 25

Conread position: 9-298
Cow position: chr24:30710965-30710673 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 53

Conread position: 91-501
Cow position: chr24:17763274-17763661 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 26

Conread position: 107-371
Cow position: chr24:30900249-30900516 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 85

Conread position: 115-359
Cow position: chr24:39955067-39955323 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 127-359
Cow position: chr24:39681815-39681578 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 73

Conread position: 130-505
Cow position: chr24:25229096-25229476 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 263
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 16, 216

Conread position: 134-375
Cow position: chr24:29845325-29845563 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 142, 50

Conread position: 135-407
Cow position: chr24:39742778-39742502 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 189
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 35

Conread position: 140-377
Cow position: chr24:28028762-28029000 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 9

Conread position: 141-373
Cow position: chr24:6149966-6149739 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 21

Conread position: 142-502
Cow position: chr24:37386409-37386756 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 85, 13

Conread position: 145-503
Cow position: chr24:6507829-6508188 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 22

Conread position: 146-366
Cow position: chr24:39500339-39500567 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 155-356
Cow position: chr24:35529850-35529649 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 121, 49

Conread position: 155-357
Cow position: chr24:43733901-43733694 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 155-369
Cow position: chr24:37204948-37205167 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 155-491
Cow position: chr24:30860567-30860241 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 186

Conread position: 155-503
Cow position: chr24:18076077-18075740 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 244
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 62

Conread position: 156-353
Cow position: chr24:16476332-16476136 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 120, 26

Conread position: 157-383
Cow position: chr24:6061469-6061692 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 181

Conread position: 162-374
Cow position: chr24:35836320-35836530 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 32

Conread position: 167-353
Cow position: chr24:27259064-27259250 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 37

Conread position: 167-502
Cow position: chr24:23694977-23695322 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 18

Conread position: 167-503
Cow position: chr24:32758841-32759184 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 27, 240

Conread position: 169-530
Cow position: chr24:28279557-28279187 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 13, 34

Conread position: 171-369
Cow position: chr24:32669190-32668989 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 26

Conread position: 182-373
Cow position: chr24:814362-814556 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 182-503
Cow position: chr24:2730672-2730979 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 94, 21

Conread position: 186-503
Cow position: chr24:13783600-13783929 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 85, 28

Conread position: 188-365
Cow position: chr24:15919600-15919421 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 79, 24

Conread position: 188-367
Cow position: chr24:27683542-27683727 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 40

Conread position: 188-502
Cow position: chr24:27096579-27096262 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 214
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 91

Conread position: 188-502
Cow position: chr24:27608208-27608540 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 89, 13

Conread position: 190-407
Cow position: chr24:25112099-25111877 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 27, 39

Conread position: 190-407
Cow position: chr24:33723952-33724188 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 190-501
Cow position: chr24:31816482-31816155 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 51

Conread position: 190-503
Cow position: chr24:39259060-39258738 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 26, 0

Conread position: 194-503
Cow position: chr24:39607660-39607989 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 203-358
Cow position: chr24:29673397-29673243 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 22

Conread position: 203-504
Cow position: chr24:17860378-17860675 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 203, 16

Conread position: 208-373
Cow position: chr24:27844646-27844811 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 34

Conread position: 208-500
Cow position: chr24:42943248-42943544 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 20

Conread position: 209-406
Cow position: chr24:33526445-33526645 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 7

Conread position: 210-359
Cow position: chr24:27229177-27229322 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 65, 109

Conread position: 211-378
Cow position: chr24:23685189-23685357 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 217-502
Cow position: chr24:36730366-36730076 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 59, 113

Conread position: 217-503
Cow position: chr24:45004822-45004530 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 67

Conread position: 218-371
Cow position: chr24:15639032-15639189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 124

Conread position: 221-359
Cow position: chr24:28060564-28060703 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 6, 118

Conread position: 221-410
Cow position: chr24:33579332-33579137 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 7

Conread position: 222-379
Cow position: chr24:8591203-8591041 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 10, 120

Conread position: 240-375
Cow position: chr24:36345039-36345170 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 242-517
Cow position: chr24:25991317-25991578 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 184, 25

Conread position: 255-502
Cow position: chr24:16267619-16267378 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 210, 136

Conread position: 255-502
Cow position: chr24:30545028-30545277 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 22, 157

Conread position: 257-396
Cow position: chr24:27629912-27630052 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 263-402
Cow position: chr24:31845630-31845771 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 303-499
Cow position: chr24:24457750-24457955 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.