Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-348 |
| Cow position: | chr29:19744032-19744376 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 1-359 |
| Cow position: | chr29:27033040-27032683 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 14-359 |
| Cow position: | chr29:20538316-20538655 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 97-353 |
| Cow position: | chr29:16359632-16359365 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 112-359 |
| Cow position: | chr29:650274-650020 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 121-359 |
| Cow position: | chr29:7749891-7750128 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 128-503 |
| Cow position: | chr29:26224313-26223957 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 130-359 |
| Cow position: | chr29:13554114-13553878 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 134-502 |
| Cow position: | chr29:478078-477688 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 134-503 |
| Cow position: | chr29:16083108-16082742 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 188 |
| Conread position: | 142-342 |
| Cow position: | chr29:17339338-17339534 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 152-501 |
| Cow position: | chr29:2588943-2589273 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 155-384 |
| Cow position: | chr29:26129454-26129220 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 155-501 |
| Cow position: | chr29:94601-94941 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 122, 85 |
| Conread position: | 155-503 |
| Cow position: | chr29:18521069-18521421 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 156-373 |
| Cow position: | chr29:18338589-18338814 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 216 |
| Conread position: | 156-393 |
| Cow position: | chr29:6472267-6472027 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 156-483 |
| Cow position: | chr29:295870-296183 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 156-497 |
| Cow position: | chr29:30812700-30812360 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 156-503 |
| Cow position: | chr29:42268647-42268279 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 298 |
| Conread position: | 157-401 |
| Cow position: | chr29:21925161-21924914 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 167-502 |
| Cow position: | chr29:798515-798867 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 169-353 |
| Cow position: | chr29:34757965-34757782 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 177-507 |
| Cow position: | chr29:32655496-32655820 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 182-401 |
| Cow position: | chr29:18695177-18694961 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 185-359 |
| Cow position: | chr29:13040632-13040806 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 185-359 |
| Cow position: | chr29:15940711-15940892 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 185-359 |
| Cow position: | chr29:38760238-38760411 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 186-460 |
| Cow position: | chr29:16663005-16662725 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 201-503 |
| Cow position: | chr29:2885546-2885866 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 203-401 |
| Cow position: | chr29:12784056-12784252 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 204-471 |
| Cow position: | chr29:254987-254717 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 208-373 |
| Cow position: | chr29:40337628-40337792 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 208-375 |
| Cow position: | chr29:19601443-19601607 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 208-503 |
| Cow position: | chr29:32809362-32809053 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 217-359 |
| Cow position: | chr29:7972149-7972291 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 217-383 |
| Cow position: | chr29:22339324-22339491 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 217-385 |
| Cow position: | chr29:9938181-9938351 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 221-373 |
| Cow position: | chr29:28280646-28280798 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 221-497 |
| Cow position: | chr29:7051843-7051564 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 222-371 |
| Cow position: | chr29:37719793-37719646 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 236-365 |
| Cow position: | chr29:22948789-22948922 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 236-502 |
| Cow position: | chr29:19338853-19338585 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 156 |
| Conread position: | 236-509 |
| Cow position: | chr29:8070671-8070386 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 238-472 |
| Cow position: | chr29:3487872-3487641 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 238-503 |
| Cow position: | chr29:38932727-38933001 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 255-381 |
| Cow position: | chr29:22332634-22332762 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 257-502 |
| Cow position: | chr29:41182866-41183114 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 261-489 |
| Cow position: | chr29:41076183-41076424 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 332-502 |
| Cow position: | chr29:10153988-10154157 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 32 |
Show alignments to all cow chromosomes.