Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-359 |
| Cow position: | chr4:30960614-30960258 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 1-501 |
| Cow position: | chr4:21057291-21056808 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 33-374 |
| Cow position: | chr4:37955053-37955416 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 59, 330 |
| Conread position: | 85-366 |
| Cow position: | chr4:62954052-62953748 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 199 |
| Conread position: | 97-359 |
| Cow position: | chr4:41867449-41867184 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 97-381 |
| Cow position: | chr4:28772061-28772349 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 109-469 |
| Cow position: | chr4:5623211-5623551 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 120-402 |
| Cow position: | chr4:6630311-6630596 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 120-454 |
| Cow position: | chr4:9714712-9714365 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 121-365 |
| Cow position: | chr4:13818452-13818697 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 121-371 |
| Cow position: | chr4:23536230-23535975 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 121-371 |
| Cow position: | chr4:61720894-61721145 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 125-359 |
| Cow position: | chr4:32726203-32725964 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 69, 217 |
| Conread position: | 125-503 |
| Cow position: | chr4:22115586-22115209 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 31, 242 |
| Conread position: | 128-358 |
| Cow position: | chr4:12913820-12914060 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 129-373 |
| Cow position: | chr4:23600150-23599896 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 133-359 |
| Cow position: | chr4:31172645-31172406 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 138-406 |
| Cow position: | chr4:33030513-33030250 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 142-367 |
| Cow position: | chr4:14159166-14159392 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 143-351 |
| Cow position: | chr4:17176122-17175914 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 143-402 |
| Cow position: | chr4:6792395-6792139 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 146-359 |
| Cow position: | chr4:20562571-20562356 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 151-482 |
| Cow position: | chr4:62570763-62570433 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 155-359 |
| Cow position: | chr4:27561344-27561136 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 155-422 |
| Cow position: | chr4:46082945-46083224 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 155-503 |
| Cow position: | chr4:48499784-48499450 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 156-358 |
| Cow position: | chr4:65919559-65919359 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 156-359 |
| Cow position: | chr4:51408027-51408225 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 156-395 |
| Cow position: | chr4:32749148-32748899 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 156-502 |
| Cow position: | chr4:11389591-11389960 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 187 |
| Conread position: | 156-503 |
| Cow position: | chr4:49885365-49885705 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 156-509 |
| Cow position: | chr4:45114659-45115015 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 239 |
| Conread position: | 157-359 |
| Cow position: | chr4:53763178-53763379 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 162-365 |
| Cow position: | chr4:30690652-30690458 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 162-369 |
| Cow position: | chr4:4321069-4321276 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 162-502 |
| Cow position: | chr4:44072833-44073193 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 162-514 |
| Cow position: | chr4:11021723-11022069 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 173, 9 |
| Conread position: | 165-379 |
| Cow position: | chr4:15623780-15623564 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 167-367 |
| Cow position: | chr4:46668502-46668302 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 177-357 |
| Cow position: | chr4:44782298-44782116 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 182-401 |
| Cow position: | chr4:46591579-46591360 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 183-401 |
| Cow position: | chr4:19542710-19542494 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 184-359 |
| Cow position: | chr4:61271717-61271893 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 186-359 |
| Cow position: | chr4:36813285-36813112 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 186-367 |
| Cow position: | chr4:2141655-2141478 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 186-502 |
| Cow position: | chr4:59129733-59130044 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 187-502 |
| Cow position: | chr4:36755661-36755342 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 190-502 |
| Cow position: | chr4:28789214-28789531 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 190-503 |
| Cow position: | chr4:52225915-52225604 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 195-353 |
| Cow position: | chr4:58433299-58433465 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 196-359 |
| Cow position: | chr4:47773734-47773892 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 198-393 |
| Cow position: | chr4:4300445-4300245 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 199-373 |
| Cow position: | chr4:29527270-29527447 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 166 |
| Conread position: | 203-359 |
| Cow position: | chr4:15904992-15904838 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 203-397 |
| Cow position: | chr4:54930526-54930714 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 87, 52 |
| Conread position: | 203-502 |
| Cow position: | chr4:15462381-15462688 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 205-401 |
| Cow position: | chr4:51122949-51122755 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 208-359 |
| Cow position: | chr4:36731087-36730930 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 208-372 |
| Cow position: | chr4:38999317-38999154 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 208-503 |
| Cow position: | chr4:51739816-51740122 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 213-502 |
| Cow position: | chr4:3274647-3274944 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 214-359 |
| Cow position: | chr4:16339707-16339852 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 216-503 |
| Cow position: | chr4:3837167-3836881 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 217-358 |
| Cow position: | chr4:42103978-42103837 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 218-373 |
| Cow position: | chr4:22528506-22528661 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 218-490 |
| Cow position: | chr4:24187732-24188006 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 147 |
| Conread position: | 220-376 |
| Cow position: | chr4:59976427-59976579 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 221-371 |
| Cow position: | chr4:61399553-61399697 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 221-393 |
| Cow position: | chr4:5924645-5924817 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 221-398 |
| Cow position: | chr4:59358555-59358734 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 221-503 |
| Cow position: | chr4:29710155-29710424 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 222-502 |
| Cow position: | chr4:19438338-19438064 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 222-502 |
| Cow position: | chr4:51784056-51783790 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 236-501 |
| Cow position: | chr4:13920234-13920499 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 254-502 |
| Cow position: | chr4:34043903-34044160 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 255-401 |
| Cow position: | chr4:48172954-48172809 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 255-454 |
| Cow position: | chr4:34630744-34630532 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 106, 23 |
| Conread position: | 255-513 |
| Cow position: | chr4:28094605-28094866 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 258-503 |
| Cow position: | chr4:46456208-46456456 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 260-375 |
| Cow position: | chr4:33149678-33149562 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 264-502 |
| Cow position: | chr4:27287270-27287527 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 265-399 |
| Cow position: | chr4:59105976-59106111 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 267-401 |
| Cow position: | chr4:11543084-11542949 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 72 |
Show alignments to all cow chromosomes.