Cow genome map

Conread name: Lym1-jns23_A07.f

Conread position: 1-155
Cow position: chr6:34508357-34508204 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 54

Conread position: 1-269
Cow position: chr6:47216048-47215770 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 87, 52

Conread position: 2-373
Cow position: chr6:42840301-42839939 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 256
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 212, 45

Conread position: 32-359
Cow position: chr6:31879253-31879585 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 215
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 21

Conread position: 56-359
Cow position: chr6:60485811-60485474 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 74-503
Cow position: chr6:60166237-60166681 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 235

Conread position: 85-357
Cow position: chr6:28564249-28563969 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 108

Conread position: 87-485
Cow position: chr6:17933182-17932772 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 65, 274

Conread position: 96-480
Cow position: chr6:4079338-4079716 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 112, 20

Conread position: 121-373
Cow position: chr6:49627381-49627129 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 167
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 73, 28

Conread position: 127-359
Cow position: chr6:68112466-68112699 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 70

Conread position: 133-501
Cow position: chr6:30474337-30473953 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 28

Conread position: 134-389
Cow position: chr6:47327050-47327311 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 138-503
Cow position: chr6:28977033-28977382 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 199, 60

Conread position: 139-358
Cow position: chr6:5500777-5501006 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 22, 0

Conread position: 142-356
Cow position: chr6:10423174-10422964 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 73

Conread position: 142-356
Cow position: chr6:44377277-44377056 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 158

Conread position: 142-359
Cow position: chr6:2582878-2582662 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 9, 14

Conread position: 142-359
Cow position: chr6:24962149-24961932 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 124, 62

Conread position: 142-366
Cow position: chr6:1907550-1907319 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 6, 76

Conread position: 142-371
Cow position: chr6:12387318-12387547 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 54

Conread position: 142-373
Cow position: chr6:29077736-29077502 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 49

Conread position: 143-385
Cow position: chr6:38218675-38218433 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 39, 79

Conread position: 143-401
Cow position: chr6:1889084-1889336 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 83, 38

Conread position: 155-359
Cow position: chr6:60153031-60152823 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 155-367
Cow position: chr6:19427448-19427228 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 155-377
Cow position: chr6:44511238-44511008 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 26

Conread position: 155-409
Cow position: chr6:6994960-6995207 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 65, 39

Conread position: 155-433
Cow position: chr6:11789996-11789712 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 40, 85

Conread position: 155-502
Cow position: chr6:1890850-1891195 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 186

Conread position: 155-502
Cow position: chr6:3118201-3118567 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 96

Conread position: 155-503
Cow position: chr6:22969075-22968721 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 251
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 23

Conread position: 156-367
Cow position: chr6:45617443-45617661 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 156-367
Cow position: chr6:57686147-57685938 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 65

Conread position: 156-368
Cow position: chr6:27710645-27710433 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 116, 29

Conread position: 156-503
Cow position: chr6:3017441-3017104 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 71, 51

Conread position: 157-378
Cow position: chr6:58594116-58594340 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 51

Conread position: 160-357
Cow position: chr6:50271108-50271305 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 18

Conread position: 162-378
Cow position: chr6:54490757-54490972 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 9

Conread position: 162-399
Cow position: chr6:20172203-20171968 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 9, 23

Conread position: 162-503
Cow position: chr6:45065038-45065367 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 152, 9

Conread position: 162-509
Cow position: chr6:51191806-51191448 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 20

Conread position: 167-374
Cow position: chr6:44371964-44372171 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 37

Conread position: 167-377
Cow position: chr6:60930916-60931131 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 40

Conread position: 167-471
Cow position: chr6:21869669-21869982 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 14

Conread position: 168-377
Cow position: chr6:6596562-6596351 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 172

Conread position: 169-502
Cow position: chr6:55659733-55660068 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 49, 27

Conread position: 186-358
Cow position: chr6:24515230-24515405 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 186-504
Cow position: chr6:29084259-29084579 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 218
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 77

Conread position: 188-339
Cow position: chr6:57680472-57680629 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 38

Conread position: 188-358
Cow position: chr6:55936022-55936188 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 29

Conread position: 188-359
Cow position: chr6:55366355-55366536 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 188-378
Cow position: chr6:52401815-52401629 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 191-464
Cow position: chr6:40137106-40137380 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 79, 37

Conread position: 192-359
Cow position: chr6:62485971-62486142 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 26

Conread position: 193-373
Cow position: chr6:34235479-34235660 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 38

Conread position: 195-381
Cow position: chr6:56902820-56902629 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 13

Conread position: 201-503
Cow position: chr6:14289391-14289703 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 65

Conread position: 202-501
Cow position: chr6:11465940-11466249 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 23, 193

Conread position: 203-367
Cow position: chr6:9008670-9008832 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 17

Conread position: 203-373
Cow position: chr6:130220-130391 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 64, 16

Conread position: 203-373
Cow position: chr6:68049378-68049209 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 74, 18

Conread position: 203-503
Cow position: chr6:49685525-49685224 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 18

Conread position: 204-410
Cow position: chr6:36202768-36202562 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 15

Conread position: 204-502
Cow position: chr6:66433886-66433582 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 73, 47

Conread position: 205-448
Cow position: chr6:22986046-22986297 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 29

Conread position: 208-500
Cow position: chr6:35613474-35613759 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 121

Conread position: 214-402
Cow position: chr6:12519445-12519264 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 26

Conread position: 216-379
Cow position: chr6:28477109-28476949 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 217-362
Cow position: chr6:33311405-33311256 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 124

Conread position: 217-502
Cow position: chr6:7253492-7253772 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 50, 171

Conread position: 217-503
Cow position: chr6:13717774-13717483 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 142, 52

Conread position: 218-359
Cow position: chr6:52002297-52002156 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 218-369
Cow position: chr6:9026446-9026294 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 218-371
Cow position: chr6:54357445-54357596 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 118

Conread position: 221-374
Cow position: chr6:33360258-33360100 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 221-462
Cow position: chr6:24941281-24941045 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 7

Conread position: 221-482
Cow position: chr6:20420300-20420025 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 12

Conread position: 221-503
Cow position: chr6:67304731-67304446 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 54, 120

Conread position: 222-358
Cow position: chr6:52556549-52556686 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 108

Conread position: 222-379
Cow position: chr6:10106066-10106229 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 222-385
Cow position: chr6:53460647-53460810 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 123

Conread position: 222-393
Cow position: chr6:44194617-44194792 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 45, 0

Conread position: 222-503
Cow position: chr6:9323087-9322805 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 44, 71

Conread position: 223-386
Cow position: chr6:18977551-18977384 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 228-359
Cow position: chr6:38987756-38987888 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 228-359
Cow position: chr6:48655151-48655280 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 47, 87

Conread position: 237-503
Cow position: chr6:24557546-24557283 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 107

Conread position: 237-503
Cow position: chr6:56860220-56859932 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 254-385
Cow position: chr6:17456761-17456625 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 255-365
Cow position: chr6:55743273-55743162 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 255-503
Cow position: chr6:20379573-20379825 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 129

Conread position: 261-502
Cow position: chr6:65846561-65846823 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 267-523
Cow position: chr6:41413155-41413414 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 70

Conread position: 270-472
Cow position: chr6:17736504-17736292 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 66, 0

Conread position: 289-502
Cow position: chr6:66874219-66873994 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 115, 0

Conread position: 289-503
Cow position: chr6:30159728-30159508 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 317-502
Cow position: chr6:24583384-24583569 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 82

Show alignments to all cow chromosomes.