Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-359 |
| Cow position: | chr8:36871225-36871596 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 3-384 |
| Cow position: | chr8:20282134-20281757 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 4-502 |
| Cow position: | chr8:20649278-20648787 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 38-316 |
| Cow position: | chr8:21717259-21716983 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 62-351 |
| Cow position: | chr8:35570312-35570609 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 97-503 |
| Cow position: | chr8:20107767-20108167 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 109-353 |
| Cow position: | chr8:45686426-45686664 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 113-407 |
| Cow position: | chr8:32719978-32719690 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 124-367 |
| Cow position: | chr8:24934149-24933902 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 82, 166 |
| Conread position: | 129-394 |
| Cow position: | chr8:39985749-39986012 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 130-503 |
| Cow position: | chr8:43904775-43904399 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 131-359 |
| Cow position: | chr8:51905054-51905287 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 136-407 |
| Cow position: | chr8:24909588-24909325 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 142-373 |
| Cow position: | chr8:9624737-9624509 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 142-497 |
| Cow position: | chr8:42578100-42578455 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 142-502 |
| Cow position: | chr8:24867766-24868134 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 143-401 |
| Cow position: | chr8:6073841-6074081 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 144-397 |
| Cow position: | chr8:10263190-10263443 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 150-387 |
| Cow position: | chr8:10434777-10434538 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 155-356 |
| Cow position: | chr8:24834679-24834488 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 155-359 |
| Cow position: | chr8:29028115-29028324 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 168 |
| Conread position: | 155-359 |
| Cow position: | chr8:35436649-35436856 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 185 |
| Conread position: | 155-502 |
| Cow position: | chr8:8010864-8010514 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 155-503 |
| Cow position: | chr8:60320484-60320132 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 156-353 |
| Cow position: | chr8:21078499-21078300 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 156-359 |
| Cow position: | chr8:8480992-8481188 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 156-359 |
| Cow position: | chr8:22103218-22103424 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 156-415 |
| Cow position: | chr8:44664613-44664885 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 156-504 |
| Cow position: | chr8:27369058-27368732 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 120, 61 |
| Conread position: | 158-359 |
| Cow position: | chr8:8134540-8134750 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 162-503 |
| Cow position: | chr8:225417-225766 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 163-373 |
| Cow position: | chr8:38572323-38572536 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 167-374 |
| Cow position: | chr8:4563471-4563685 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 167-502 |
| Cow position: | chr8:37122927-37122603 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 167-503 |
| Cow position: | chr8:53642466-53642796 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 176-389 |
| Cow position: | chr8:606490-606702 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 181-501 |
| Cow position: | chr8:55323619-55323289 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 328 |
| Conread position: | 184-377 |
| Cow position: | chr8:4940377-4940569 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 185-502 |
| Cow position: | chr8:20673842-20674152 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 186-359 |
| Cow position: | chr8:25349642-25349466 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 186-501 |
| Cow position: | chr8:16093204-16092887 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 187-368 |
| Cow position: | chr8:42889203-42889384 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 190-359 |
| Cow position: | chr8:4161101-4161269 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 194-375 |
| Cow position: | chr8:60688295-60688471 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 196-359 |
| Cow position: | chr8:21947906-21948072 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 202-348 |
| Cow position: | chr8:42315120-42315262 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 202-385 |
| Cow position: | chr8:34663767-34663581 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 203-373 |
| Cow position: | chr8:21961161-21960994 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 208-357 |
| Cow position: | chr8:59061583-59061431 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 208-359 |
| Cow position: | chr8:6232987-6233140 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 208-359 |
| Cow position: | chr8:40030549-40030704 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 208-369 |
| Cow position: | chr8:11606245-11606082 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 208-374 |
| Cow position: | chr8:10337113-10337285 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 208-426 |
| Cow position: | chr8:47136098-47136323 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 208-480 |
| Cow position: | chr8:26877362-26877078 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 210-503 |
| Cow position: | chr8:1107280-1107568 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 217-371 |
| Cow position: | chr8:8902063-8902224 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 217-377 |
| Cow position: | chr8:51361465-51361299 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 218-415 |
| Cow position: | chr8:32491455-32491260 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 219-369 |
| Cow position: | chr8:58642782-58642933 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 220-369 |
| Cow position: | chr8:57650252-57650397 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 221-384 |
| Cow position: | chr8:12660852-12661014 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 222-369 |
| Cow position: | chr8:33814839-33814690 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 222-503 |
| Cow position: | chr8:26922534-26922255 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 56, 155 |
| Conread position: | 223-385 |
| Cow position: | chr8:31637730-31637567 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 223-496 |
| Cow position: | chr8:31289070-31289338 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 91 |
| Conread position: | 228-371 |
| Cow position: | chr8:1841003-1841143 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 228-502 |
| Cow position: | chr8:51303580-51303299 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 232-502 |
| Cow position: | chr8:47678414-47678141 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 165 |
| Conread position: | 234-502 |
| Cow position: | chr8:42794430-42794713 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 236-395 |
| Cow position: | chr8:24517549-24517706 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 241-502 |
| Cow position: | chr8:31262578-31262322 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 242-503 |
| Cow position: | chr8:48955792-48955547 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 245-365 |
| Cow position: | chr8:51588704-51588824 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 252-401 |
| Cow position: | chr8:300151-300301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 255-481 |
| Cow position: | chr8:54231161-54230931 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 257-500 |
| Cow position: | chr8:58346669-58346425 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 260-502 |
| Cow position: | chr8:18081394-18081157 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 261-375 |
| Cow position: | chr8:10400164-10400049 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 275-502 |
| Cow position: | chr8:13559582-13559351 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 127 |
| Conread position: | 335-493 |
| Cow position: | chr8:28205478-28205311 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.