Cow genome map

Conread name: Lym1-jns23_A07.f

Conread position: 1-399
Cow position: chr9:9324839-9325264 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 11-313
Cow position: chr9:64024116-64024430 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 80, 18

Conread position: 32-358
Cow position: chr9:12322116-12321779 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 21

Conread position: 84-359
Cow position: chr9:52409468-52409173 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 78, 275

Conread position: 85-350
Cow position: chr9:47547748-47547481 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 21

Conread position: 85-357
Cow position: chr9:33847083-33846795 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 204
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 59, 270

Conread position: 85-422
Cow position: chr9:34762843-34762509 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 32

Conread position: 96-415
Cow position: chr9:52578523-52578195 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 21

Conread position: 97-406
Cow position: chr9:51311685-51311997 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 37

Conread position: 109-353
Cow position: chr9:4285236-4284998 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 23

Conread position: 113-503
Cow position: chr9:41781928-41782340 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 124-504
Cow position: chr9:8779192-8778800 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 130-359
Cow position: chr9:11146605-11146373 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 11

Conread position: 130-380
Cow position: chr9:3722824-3722565 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 26, 207

Conread position: 131-359
Cow position: chr9:5141128-5141356 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 161

Conread position: 131-367
Cow position: chr9:34310076-34310324 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 131-381
Cow position: chr9:21674941-21674681 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 25

Conread position: 132-371
Cow position: chr9:60459239-60459468 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 133-358
Cow position: chr9:20839665-20839897 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 120

Conread position: 133-373
Cow position: chr9:19382381-19382618 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 23

Conread position: 141-372
Cow position: chr9:64091745-64091984 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 160
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 144-502
Cow position: chr9:44408105-44408461 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 236
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 5

Conread position: 155-359
Cow position: chr9:3724988-3724780 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 186

Conread position: 155-502
Cow position: chr9:34093360-34093008 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 240
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 195

Conread position: 155-507
Cow position: chr9:14961025-14961382 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 54, 40

Conread position: 156-349
Cow position: chr9:9200647-9200453 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 11

Conread position: 156-359
Cow position: chr9:5621959-5621748 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 156-373
Cow position: chr9:32396019-32396239 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 196

Conread position: 156-511
Cow position: chr9:8950982-8951327 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 46

Conread position: 157-354
Cow position: chr9:26828741-26828544 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 8

Conread position: 157-359
Cow position: chr9:12355934-12356138 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 38

Conread position: 159-406
Cow position: chr9:9416322-9416079 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 68

Conread position: 160-503
Cow position: chr9:16745755-16746120 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 155

Conread position: 162-367
Cow position: chr9:55084207-55084007 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 46, 9

Conread position: 162-370
Cow position: chr9:3070330-3070130 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 115, 9

Conread position: 162-431
Cow position: chr9:47875866-47875593 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 20

Conread position: 162-518
Cow position: chr9:41317881-41317533 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 9, 53

Conread position: 164-454
Cow position: chr9:24850326-24850623 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 66, 31

Conread position: 167-384
Cow position: chr9:38692448-38692231 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 18

Conread position: 167-456
Cow position: chr9:36999973-36999678 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 27, 5

Conread position: 167-502
Cow position: chr9:10761263-10760917 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 27, 31

Conread position: 168-374
Cow position: chr9:35368965-35369177 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 83

Conread position: 170-359
Cow position: chr9:8099730-8099540 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 39

Conread position: 170-506
Cow position: chr9:41958710-41958378 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 24, 228

Conread position: 182-359
Cow position: chr9:54924729-54924908 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 86, 32

Conread position: 182-372
Cow position: chr9:5340736-5340927 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 154

Conread position: 188-379
Cow position: chr9:35100975-35101169 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 6, 0

Conread position: 188-503
Cow position: chr9:58673848-58674159 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 60, 11

Conread position: 190-359
Cow position: chr9:5029628-5029797 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 36

Conread position: 193-359
Cow position: chr9:35850013-35850180 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 24, 145

Conread position: 194-366
Cow position: chr9:3216322-3216494 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 73, 26

Conread position: 194-455
Cow position: chr9:3582830-3582565 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 143

Conread position: 201-352
Cow position: chr9:28706079-28705928 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 55

Conread position: 203-395
Cow position: chr9:49403881-49404072 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 119, 16

Conread position: 203-438
Cow position: chr9:33940732-33940970 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 226

Conread position: 203-502
Cow position: chr9:37069442-37069148 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 17

Conread position: 204-502
Cow position: chr9:44552873-44553173 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 72, 150

Conread position: 205-357
Cow position: chr9:18002822-18002669 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 208-367
Cow position: chr9:24886491-24886333 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 60

Conread position: 208-373
Cow position: chr9:11155637-11155801 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 68, 5

Conread position: 208-391
Cow position: chr9:49764785-49764970 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 214-396
Cow position: chr9:11743753-11743940 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 217-369
Cow position: chr9:9556448-9556600 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 33

Conread position: 217-502
Cow position: chr9:5518511-5518213 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 233

Conread position: 217-503
Cow position: chr9:30020113-30020401 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 17, 125

Conread position: 217-503
Cow position: chr9:34400173-34400474 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 15

Conread position: 219-379
Cow position: chr9:10118524-10118360 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 220-501
Cow position: chr9:26099479-26099745 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 56, 156

Conread position: 221-359
Cow position: chr9:52787394-52787254 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 221-359
Cow position: chr9:55262436-55262301 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 114

Conread position: 221-373
Cow position: chr9:27449477-27449629 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 49

Conread position: 221-379
Cow position: chr9:24904619-24904779 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 221-401
Cow position: chr9:15054020-15054202 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 221-502
Cow position: chr9:8600476-8600758 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 144

Conread position: 221-503
Cow position: chr9:5399862-5400167 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 55, 116

Conread position: 221-503
Cow position: chr9:40060188-40059900 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 146

Conread position: 222-371
Cow position: chr9:36586675-36586525 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 230-359
Cow position: chr9:33100989-33100860 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 109

Conread position: 234-372
Cow position: chr9:2205902-2205764 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 103

Conread position: 235-472
Cow position: chr9:9368800-9368570 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 105

Conread position: 239-381
Cow position: chr9:51744305-51744161 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 102

Conread position: 249-503
Cow position: chr9:20579447-20579191 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 29

Conread position: 250-502
Cow position: chr9:19067971-19068227 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 7

Conread position: 259-418
Cow position: chr9:27292063-27291907 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 70

Conread position: 275-385
Cow position: chr9:47836846-47836736 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 277-503
Cow position: chr9:3844875-3844662 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 197, 32

Conread position: 337-503
Cow position: chr9:32688537-32688366 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.