Cow genome map
| Conread name: | Lym2-sn39_H10.f |
| Conread position: | 67-334 |
| Cow position: | chr11:4065199-4065472 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 67-489 |
| Cow position: | chr11:8283104-8282684 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 85-489 |
| Cow position: | chr11:4270849-4271262 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 360 |
| Conread position: | 85-489 |
| Cow position: | chr11:71329656-71329251 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 97-481 |
| Cow position: | chr11:72109965-72110345 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 293 |
| Conread position: | 97-488 |
| Cow position: | chr11:41170692-41171084 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 97-489 |
| Cow position: | chr11:26124931-26125325 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 97-489 |
| Cow position: | chr11:38835431-38835809 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 97-489 |
| Cow position: | chr11:58134387-58133977 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 100-473 |
| Cow position: | chr11:4027565-4027931 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 209 |
| Conread position: | 100-487 |
| Cow position: | chr11:45111366-45110973 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 276 |
| Conread position: | 100-489 |
| Cow position: | chr11:66726468-66726073 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 101-489 |
| Cow position: | chr11:85393814-85394203 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 295 |
| Conread position: | 103-481 |
| Cow position: | chr11:8261713-8262084 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 18 |
| Conread position: | 110-481 |
| Cow position: | chr11:8887171-8887537 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 163 |
| Conread position: | 112-243 |
| Cow position: | chr11:59369590-59369461 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 113-481 |
| Cow position: | chr11:12351080-12351453 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 316 |
| Conread position: | 119-481 |
| Cow position: | chr11:29668654-29669013 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 121-481 |
| Cow position: | chr11:5343242-5343602 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr11:20920770-20921130 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr11:36744205-36744565 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr11:37491671-37492033 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 73 |
| Conread position: | 121-481 |
| Cow position: | chr11:64045973-64045613 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr11:75920377-75920030 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 121-482 |
| Cow position: | chr11:25527533-25527187 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 165 |
| Conread position: | 121-489 |
| Cow position: | chr11:10847417-10847052 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 121-489 |
| Cow position: | chr11:44157278-44157628 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 123-481 |
| Cow position: | chr11:37065145-37065508 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 259 |
| Conread position: | 126-481 |
| Cow position: | chr11:19064279-19064634 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr11:32450837-32450483 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 126-481 |
| Cow position: | chr11:52419358-52419003 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr11:57628076-57628431 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr11:63659618-63659966 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 126-481 |
| Cow position: | chr11:67450468-67450113 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 158 |
| Conread position: | 126-481 |
| Cow position: | chr11:67846601-67846953 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 126-489 |
| Cow position: | chr11:3492981-3492618 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-489 |
| Cow position: | chr11:4041106-4041464 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 126-489 |
| Cow position: | chr11:15983594-15983231 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-489 |
| Cow position: | chr11:53287486-53287847 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 127-481 |
| Cow position: | chr11:37477149-37477504 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 137-476 |
| Cow position: | chr11:7113553-7113216 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 104 |
| Conread position: | 138-489 |
| Cow position: | chr11:10090294-10089941 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 183 |
| Conread position: | 140-489 |
| Cow position: | chr11:37093106-37093454 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 141-481 |
| Cow position: | chr11:12358470-12358806 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 142-489 |
| Cow position: | chr11:19102532-19102879 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-489 |
| Cow position: | chr11:77728569-77728920 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 146-481 |
| Cow position: | chr11:28229803-28230133 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 240 |
| Conread position: | 162-489 |
| Cow position: | chr11:9157499-9157818 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 181-481 |
| Cow position: | chr11:10210048-10210347 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 7 |
| Conread position: | 235-481 |
| Cow position: | chr11:44495734-44495982 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 167 |
| Conread position: | 246-481 |
| Cow position: | chr11:15998743-15998510 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.