Cow genome map
| Conread name: | Lym2-sn39_H10.f |
| Conread position: | 67-421 |
| Cow position: | chr15:1237291-1236939 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 67-475 |
| Cow position: | chr15:36642584-36642190 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 67-481 |
| Cow position: | chr15:40105435-40105027 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 67-482 |
| Cow position: | chr15:51672324-51671912 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 236 |
| Conread position: | 67-489 |
| Cow position: | chr15:15265687-15266094 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 205 |
| Conread position: | 97-396 |
| Cow position: | chr15:30810568-30810273 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 97-456 |
| Cow position: | chr15:51216531-51216173 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 97-489 |
| Cow position: | chr15:6553914-6554303 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 97-489 |
| Cow position: | chr15:12421224-12421615 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 97-489 |
| Cow position: | chr15:18576657-18576271 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 245 |
| Conread position: | 97-489 |
| Cow position: | chr15:42491147-42490756 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 264 |
| Conread position: | 99-481 |
| Cow position: | chr15:8750368-8749986 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 99-489 |
| Cow position: | chr15:4649769-4649388 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 286 |
| Conread position: | 99-489 |
| Cow position: | chr15:6156011-6156403 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 100-393 |
| Cow position: | chr15:36626731-36627025 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 100-427 |
| Cow position: | chr15:8408494-8408165 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 124 |
| Conread position: | 100-489 |
| Cow position: | chr15:1764029-1763643 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 100-489 |
| Cow position: | chr15:4812260-4811875 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 101-481 |
| Cow position: | chr15:12615001-12614626 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 112 |
| Conread position: | 101-489 |
| Cow position: | chr15:4385208-4384826 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 320 |
| Conread position: | 104-481 |
| Cow position: | chr15:6078674-6078291 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 12 |
| Conread position: | 111-489 |
| Cow position: | chr15:7837172-7836795 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 116-481 |
| Cow position: | chr15:1772423-1772058 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 212 |
| Conread position: | 116-481 |
| Cow position: | chr15:36970848-36970483 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-484 |
| Cow position: | chr15:4733781-4733417 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 119-481 |
| Cow position: | chr15:3037591-3037951 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 269 |
| Conread position: | 119-489 |
| Cow position: | chr15:24295012-24294642 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-413 |
| Cow position: | chr15:11298899-11299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 276, 75 |
| Conread position: | 121-479 |
| Cow position: | chr15:7522575-7522927 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:4169781-4170136 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 18 |
| Conread position: | 121-481 |
| Cow position: | chr15:7921724-7922082 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:21665828-21666187 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:21961426-21961066 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:25789051-25789409 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:29009758-29009402 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:32494468-32494827 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:36648826-36648471 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 121-481 |
| Cow position: | chr15:41366093-41365739 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:690708-690343 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:2076566-2076198 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:7544800-7544431 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:15347201-15347569 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:17039339-17039701 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:18332910-18333276 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 121-489 |
| Cow position: | chr15:19738135-19738502 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 122-489 |
| Cow position: | chr15:4922069-4921695 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 324 |
| Conread position: | 126-481 |
| Cow position: | chr15:1519236-1519590 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:1782168-1781813 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:1834547-1834901 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:2647742-2648097 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:3009937-3010292 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:4196377-4196022 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:6472003-6472351 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 174 |
| Conread position: | 126-481 |
| Cow position: | chr15:18268073-18268428 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:28490227-28490582 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr15:50124028-50124380 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 127-481 |
| Cow position: | chr15:20749329-20748975 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 293 |
| Conread position: | 140-489 |
| Cow position: | chr15:42936613-42936265 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 151-481 |
| Cow position: | chr15:35735342-35735014 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 167-488 |
| Cow position: | chr15:3261543-3261855 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 28 |
| Conread position: | 186-481 |
| Cow position: | chr15:22920979-22920684 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 213-489 |
| Cow position: | chr15:32679730-32679998 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 238-481 |
| Cow position: | chr15:21877555-21877798 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-481 |
| Cow position: | chr15:13428818-13428598 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-481 |
| Cow position: | chr15:22204340-22204554 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-489 |
| Cow position: | chr15:55934-55752 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 313-483 |
| Cow position: | chr15:6650536-6650368 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.