Cow genome map
Conread name: | Lym2-sn39_H10.f |
Conread position: | 67-340 |
Cow position: | chr22:23853648-23853377 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 201 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 59, 43 |
Conread position: | 71-481 |
Cow position: | chr22:13917817-13917407 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 24 |
Conread position: | 76-446 |
Cow position: | chr22:41419385-41419755 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 19 |
Conread position: | 94-489 |
Cow position: | chr22:44934272-44933876 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 294 |
Conread position: | 97-420 |
Cow position: | chr22:36580897-36581209 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 212 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 297, 91 |
Conread position: | 97-488 |
Cow position: | chr22:39469234-39469622 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 22 |
Conread position: | 97-489 |
Cow position: | chr22:560416-560809 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 168 |
Conread position: | 97-489 |
Cow position: | chr22:19143410-19143803 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 97-489 |
Cow position: | chr22:21589613-21589223 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 303 |
Conread position: | 97-489 |
Cow position: | chr22:36861241-36861634 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 98-489 |
Cow position: | chr22:1048689-1048307 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 261 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 15, 89 |
Conread position: | 99-481 |
Cow position: | chr22:17328452-17328835 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 100-481 |
Cow position: | chr22:1321872-1321516 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 100-481 |
Cow position: | chr22:11031245-11030864 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 100-489 |
Cow position: | chr22:44352680-44353060 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 102-481 |
Cow position: | chr22:15851605-15851239 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 9 |
Conread position: | 106-371 |
Cow position: | chr22:44475513-44475258 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 190 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 113-481 |
Cow position: | chr22:10546917-10546549 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 113-487 |
Cow position: | chr22:18816114-18816483 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 117-481 |
Cow position: | chr22:1319665-1319301 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 121-479 |
Cow position: | chr22:36737023-36736669 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 191 |
Conread position: | 121-479 |
Cow position: | chr22:46547400-46547758 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 121-481 |
Cow position: | chr22:5673001-5672641 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 121-481 |
Cow position: | chr22:36533477-36533835 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 267 |
Conread position: | 121-481 |
Cow position: | chr22:39881912-39882272 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 121-481 |
Cow position: | chr22:44490151-44489791 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 121-481 |
Cow position: | chr22:46853606-46853246 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 125 |
Conread position: | 121-484 |
Cow position: | chr22:157642-158001 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 213 |
Conread position: | 121-489 |
Cow position: | chr22:31313603-31313237 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 121-489 |
Cow position: | chr22:31334774-31335137 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 0 |
Conread position: | 121-489 |
Cow position: | chr22:34168595-34168228 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 121-489 |
Cow position: | chr22:42991436-42991068 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 122-489 |
Cow position: | chr22:292907-293261 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 249 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 47, 36 |
Conread position: | 122-489 |
Cow position: | chr22:32347727-32348084 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 255 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 272, 104 |
Conread position: | 125-433 |
Cow position: | chr22:310037-309733 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 214 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 126-479 |
Cow position: | chr22:35672097-35672449 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 238, 0 |
Conread position: | 126-481 |
Cow position: | chr22:537360-537005 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 126-481 |
Cow position: | chr22:1879052-1878696 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 0 |
Conread position: | 126-481 |
Cow position: | chr22:3278097-3278449 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 126-481 |
Cow position: | chr22:6020921-6020566 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 126-481 |
Cow position: | chr22:20240583-20240937 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 126-481 |
Cow position: | chr22:27309514-27309869 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 126-483 |
Cow position: | chr22:27284290-27283946 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 177, 0 |
Conread position: | 126-489 |
Cow position: | chr22:326911-327260 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 127-225 |
Cow position: | chr22:13773153-13773056 (view UCSC Genome Browser custom track) |
Alignm length: | 99 |
Alignm identity: | 84 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 127-481 |
Cow position: | chr22:15313693-15314046 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 271 |
Conread position: | 127-489 |
Cow position: | chr22:10909574-10909942 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 202 |
Conread position: | 130-489 |
Cow position: | chr22:37131888-37131544 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 134-481 |
Cow position: | chr22:5233054-5233401 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 140-481 |
Cow position: | chr22:36184001-36183663 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 154-457 |
Cow position: | chr22:44396681-44396379 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 171-481 |
Cow position: | chr22:32485139-32485448 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 209-481 |
Cow position: | chr22:24950006-24949734 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 240-489 |
Cow position: | chr22:27386286-27386535 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 275-481 |
Cow position: | chr22:37265565-37265358 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 149 |
Alignm E-value: | 7e-33 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 284-482 |
Cow position: | chr22:1293395-1293593 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 143 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 135, 117 |
Conread position: | 306-481 |
Cow position: | chr22:13773053-13772882 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 129 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.