Cow genome map

Conread name: Lym2-sn39_H10.f

Conread position: 67-340
Cow position: chr22:23853648-23853377 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 43

Conread position: 71-481
Cow position: chr22:13917817-13917407 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 24

Conread position: 76-446
Cow position: chr22:41419385-41419755 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 19

Conread position: 94-489
Cow position: chr22:44934272-44933876 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 294

Conread position: 97-420
Cow position: chr22:36580897-36581209 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 297, 91

Conread position: 97-488
Cow position: chr22:39469234-39469622 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 97-489
Cow position: chr22:560416-560809 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 168

Conread position: 97-489
Cow position: chr22:19143410-19143803 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 97-489
Cow position: chr22:21589613-21589223 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 303

Conread position: 97-489
Cow position: chr22:36861241-36861634 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 98-489
Cow position: chr22:1048689-1048307 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 15, 89

Conread position: 99-481
Cow position: chr22:17328452-17328835 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 100-481
Cow position: chr22:1321872-1321516 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 100-481
Cow position: chr22:11031245-11030864 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 100-489
Cow position: chr22:44352680-44353060 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 102-481
Cow position: chr22:15851605-15851239 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 9

Conread position: 106-371
Cow position: chr22:44475513-44475258 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 80, 0

Conread position: 113-481
Cow position: chr22:10546917-10546549 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 113-487
Cow position: chr22:18816114-18816483 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 117-481
Cow position: chr22:1319665-1319301 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-479
Cow position: chr22:36737023-36736669 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 191

Conread position: 121-479
Cow position: chr22:46547400-46547758 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chr22:5673001-5672641 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chr22:36533477-36533835 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 267

Conread position: 121-481
Cow position: chr22:39881912-39882272 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chr22:44490151-44489791 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chr22:46853606-46853246 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 125

Conread position: 121-484
Cow position: chr22:157642-158001 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 213

Conread position: 121-489
Cow position: chr22:31313603-31313237 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 121-489
Cow position: chr22:31334774-31335137 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 121-489
Cow position: chr22:34168595-34168228 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 121-489
Cow position: chr22:42991436-42991068 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-489
Cow position: chr22:292907-293261 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 47, 36

Conread position: 122-489
Cow position: chr22:32347727-32348084 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 272, 104

Conread position: 125-433
Cow position: chr22:310037-309733 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 126-479
Cow position: chr22:35672097-35672449 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 126-481
Cow position: chr22:537360-537005 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chr22:1879052-1878696 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 126-481
Cow position: chr22:3278097-3278449 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 126-481
Cow position: chr22:6020921-6020566 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chr22:20240583-20240937 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 126-481
Cow position: chr22:27309514-27309869 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-483
Cow position: chr22:27284290-27283946 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 126-489
Cow position: chr22:326911-327260 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 127-225
Cow position: chr22:13773153-13773056 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 127-481
Cow position: chr22:15313693-15314046 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 271

Conread position: 127-489
Cow position: chr22:10909574-10909942 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 202

Conread position: 130-489
Cow position: chr22:37131888-37131544 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 134-481
Cow position: chr22:5233054-5233401 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 140-481
Cow position: chr22:36184001-36183663 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 154-457
Cow position: chr22:44396681-44396379 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 171-481
Cow position: chr22:32485139-32485448 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 209-481
Cow position: chr22:24950006-24949734 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 240-489
Cow position: chr22:27386286-27386535 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 275-481
Cow position: chr22:37265565-37265358 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 284-482
Cow position: chr22:1293395-1293593 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 135, 117

Conread position: 306-481
Cow position: chr22:13773053-13772882 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 0

Show alignments to all cow chromosomes.