Cow genome map
| Conread name: | Lym2-sn39_H10.f |
| Conread position: | 67-280 |
| Cow position: | chr5:23228375-23228163 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 67-481 |
| Cow position: | chr5:49593310-49593724 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 97-481 |
| Cow position: | chr5:24098765-24098380 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 97-481 |
| Cow position: | chr5:57482430-57482815 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 97-489 |
| Cow position: | chr5:415607-415999 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-489 |
| Cow position: | chr5:2914564-2914174 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 97-489 |
| Cow position: | chr5:4069103-4068713 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 97-489 |
| Cow position: | chr5:37732462-37732069 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 97-489 |
| Cow position: | chr5:64781902-64782295 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 98-481 |
| Cow position: | chr5:41962125-41962507 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 100-481 |
| Cow position: | chr5:10776146-10776533 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 100-489 |
| Cow position: | chr5:32945988-32945598 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 321 |
| Conread position: | 100-489 |
| Cow position: | chr5:46738476-46738861 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 103-481 |
| Cow position: | chr5:46630332-46630707 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 106-484 |
| Cow position: | chr5:25000538-25000924 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 109-481 |
| Cow position: | chr5:39164696-39165066 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 220 |
| Conread position: | 110-481 |
| Cow position: | chr5:49518761-49518391 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 116-481 |
| Cow position: | chr5:6588923-6589290 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 116-481 |
| Cow position: | chr5:29042608-29042243 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 172 |
| Conread position: | 116-481 |
| Cow position: | chr5:59482349-59481986 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 117-481 |
| Cow position: | chr5:34203030-34202671 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 191 |
| Conread position: | 119-481 |
| Cow position: | chr5:24577008-24576645 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 119-489 |
| Cow position: | chr5:32673647-32674019 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 307 |
| Conread position: | 121-481 |
| Cow position: | chr5:26079127-26079487 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr5:41550835-41551196 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 121-481 |
| Cow position: | chr5:44459574-44459214 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-481 |
| Cow position: | chr5:48468188-48468545 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 121-481 |
| Cow position: | chr5:49182360-49182007 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 121-481 |
| Cow position: | chr5:55628077-55627723 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 121-489 |
| Cow position: | chr5:49119190-49119558 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-479 |
| Cow position: | chr5:27909186-27909537 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 126-480 |
| Cow position: | chr5:31706660-31706308 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 126-480 |
| Cow position: | chr5:47831027-47831372 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 126-481 |
| Cow position: | chr5:2531357-2531002 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr5:4019112-4019467 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr5:32772568-32772213 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-481 |
| Cow position: | chr5:45182017-45182378 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 126-481 |
| Cow position: | chr5:46776166-46775810 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 344 |
| Conread position: | 126-481 |
| Cow position: | chr5:54932132-54932486 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 126-489 |
| Cow position: | chr5:59060704-59060344 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 169 |
| Conread position: | 127-481 |
| Cow position: | chr5:32733167-32733521 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-489 |
| Cow position: | chr5:2430047-2430409 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-481 |
| Cow position: | chr5:14380244-14379894 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 140-489 |
| Cow position: | chr5:48808643-48808992 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-481 |
| Cow position: | chr5:61273140-61273450 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 166-489 |
| Cow position: | chr5:6158152-6158471 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 43 |
| Conread position: | 169-489 |
| Cow position: | chr5:1341755-1342070 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 206-481 |
| Cow position: | chr5:58819628-58819903 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-481 |
| Cow position: | chr5:5317759-5318025 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 150 |
| Conread position: | 228-481 |
| Cow position: | chr5:4088789-4088536 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-481 |
| Cow position: | chr5:25206763-25207011 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 256-489 |
| Cow position: | chr5:7273810-7273575 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 261-481 |
| Cow position: | chr5:18665913-18665693 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-481 |
| Cow position: | chr5:53715176-53714985 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-489 |
| Cow position: | chr5:46005460-46005660 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 319-481 |
| Cow position: | chr5:10843981-10844143 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.