Cow genome map

Conread name: Lym2-sn39_H10.f

Conread position: 48-481
Cow position: chrX:2143421-2142993 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 6

Conread position: 67-393
Cow position: chrX:28549987-28549659 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 67-481
Cow position: chrX:12973108-12973523 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 69-405
Cow position: chrX:31725146-31724809 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 96-489
Cow position: chrX:32467345-32466952 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 97-480
Cow position: chrX:16699393-16699010 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 97-481
Cow position: chrX:30183801-30184185 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 312

Conread position: 97-489
Cow position: chrX:1547027-1546635 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 97-489
Cow position: chrX:15599022-15598630 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 97-489
Cow position: chrX:18954432-18954822 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 123

Conread position: 97-489
Cow position: chrX:21223021-21222628 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 97-489
Cow position: chrX:23391506-23391901 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 97-489
Cow position: chrX:30711442-30711054 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 102

Conread position: 98-489
Cow position: chrX:30368926-30369301 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 25

Conread position: 99-481
Cow position: chrX:24089487-24089110 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 100-479
Cow position: chrX:29872475-29872849 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 75

Conread position: 100-489
Cow position: chrX:970858-970466 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 100-489
Cow position: chrX:23455489-23455874 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 100-489
Cow position: chrX:26767107-26767497 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 306

Conread position: 101-488
Cow position: chrX:15127153-15127540 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 206

Conread position: 102-480
Cow position: chrX:40056980-40057355 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 103-481
Cow position: chrX:30142310-30142680 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 103-489
Cow position: chrX:2536696-2537071 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 110-481
Cow position: chrX:21289411-21289783 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 110-481
Cow position: chrX:21602957-21602596 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 110-481
Cow position: chrX:35017887-35017522 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 9

Conread position: 112-481
Cow position: chrX:24121843-24122209 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 113-489
Cow position: chrX:22582623-22583000 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 116-481
Cow position: chrX:16363051-16363416 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 117-481
Cow position: chrX:23019396-23019032 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 62

Conread position: 119-417
Cow position: chrX:40247246-40247542 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 119-489
Cow position: chrX:17478452-17478824 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 119-489
Cow position: chrX:26528046-26527676 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-456
Cow position: chrX:31191742-31192069 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 22

Conread position: 121-481
Cow position: chrX:982706-982346 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chrX:5283667-5284026 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 0

Conread position: 121-481
Cow position: chrX:6909278-6909628 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 125

Conread position: 121-481
Cow position: chrX:7481671-7481311 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chrX:8670659-8670301 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 121-481
Cow position: chrX:9192576-9192936 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chrX:18659715-18660074 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 121-481
Cow position: chrX:20804195-20803834 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 121-481
Cow position: chrX:23047212-23046854 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 121-481
Cow position: chrX:39521975-39521615 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-481
Cow position: chrX:41410953-41411313 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-489
Cow position: chrX:320535-320169 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 121-489
Cow position: chrX:8454820-8454452 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-489
Cow position: chrX:12669796-12670161 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 313

Conread position: 121-489
Cow position: chrX:21829592-21829224 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 32

Conread position: 121-489
Cow position: chrX:27494778-27494408 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 122-479
Cow position: chrX:9125426-9125069 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 122-489
Cow position: chrX:5323656-5324023 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 123-359
Cow position: chrX:10417891-10418120 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 87

Conread position: 123-481
Cow position: chrX:21632521-21632875 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 123-481
Cow position: chrX:26627966-26628324 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-469
Cow position: chrX:28585043-28584700 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-478
Cow position: chrX:22778375-22778023 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-479
Cow position: chrX:37812225-37811872 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:2604111-2603757 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 59

Conread position: 126-481
Cow position: chrX:7030251-7029897 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 126-481
Cow position: chrX:7093661-7093307 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 0

Conread position: 126-481
Cow position: chrX:7751963-7751607 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 126-481
Cow position: chrX:8587157-8586802 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:9008401-9008050 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 126-481
Cow position: chrX:10531495-10531850 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:11464939-11465293 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 126-481
Cow position: chrX:12654697-12655047 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 126-481
Cow position: chrX:14786809-14787164 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:15179368-15179721 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 0

Conread position: 126-481
Cow position: chrX:16275740-16275385 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 139

Conread position: 126-481
Cow position: chrX:18219460-18219105 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:20315992-20316347 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 209

Conread position: 126-481
Cow position: chrX:22525541-22525896 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:27426257-27426608 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 126-481
Cow position: chrX:29947770-29947415 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-481
Cow position: chrX:30173608-30173954 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 126-481
Cow position: chrX:31187182-31187527 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 126-489
Cow position: chrX:2101922-2101559 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-489
Cow position: chrX:2562794-2563157 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 126-489
Cow position: chrX:35529925-35529560 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 126-489
Cow position: chrX:37849077-37848714 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 127-481
Cow position: chrX:12803801-12804154 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 292

Conread position: 130-481
Cow position: chrX:13398061-13398408 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 140-489
Cow position: chrX:2482589-2482938 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 143-489
Cow position: chrX:13413071-13413415 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 159-489
Cow position: chrX:29853536-29853863 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 0

Conread position: 165-481
Cow position: chrX:2859777-2860093 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 165-481
Cow position: chrX:5394938-5395255 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 165-481
Cow position: chrX:26400445-26400759 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 165-489
Cow position: chrX:32094939-32095262 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 253

Conread position: 182-489
Cow position: chrX:16017136-16017441 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 61, 18

Conread position: 198-488
Cow position: chrX:21490220-21489932 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 207-481
Cow position: chrX:3084920-3085193 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 210-481
Cow position: chrX:12288957-12289233 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 211-463
Cow position: chrX:5336491-5336742 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 246-481
Cow position: chrX:8479644-8479413 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 171, 0

Conread position: 253-481
Cow position: chrX:21587101-21586875 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 258-481
Cow position: chrX:30666008-30666230 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 132, 0

Conread position: 276-481
Cow position: chrX:22130793-22130994 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 66

Conread position: 311-479
Cow position: chrX:12342071-12341903 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.