Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 90-267 |
| Cow position: | chr11:46246407-46246580 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 92-384 |
| Cow position: | chr11:21474411-21474116 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 93-193 |
| Cow position: | chr11:71329745-71329645 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 93-210 |
| Cow position: | chr11:40775845-40775962 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 93-257 |
| Cow position: | chr11:8245465-8245300 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-267 |
| Cow position: | chr11:4270704-4270878 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 93-268 |
| Cow position: | chr11:10847599-10847424 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr11:11988264-11988089 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr11:38835274-38835449 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr11:41170536-41170710 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 93-268 |
| Cow position: | chr11:43514479-43514650 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 68, 149 |
| Conread position: | 93-268 |
| Cow position: | chr11:44157096-44157271 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 93-268 |
| Cow position: | chr11:53431909-53432084 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr11:58134544-58134369 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-269 |
| Cow position: | chr11:31926324-31926153 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 93-270 |
| Cow position: | chr11:20510280-20510103 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 93-275 |
| Cow position: | chr11:4027409-4027589 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 93-275 |
| Cow position: | chr11:9157003-9157180 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 93-275 |
| Cow position: | chr11:44251949-44251773 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 93-275 |
| Cow position: | chr11:47760540-47760726 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 163 |
| Conread position: | 93-282 |
| Cow position: | chr11:76374056-76374240 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 93-283 |
| Cow position: | chr11:12093710-12093526 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 93-283 |
| Cow position: | chr11:12358267-12358457 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 149 |
| Conread position: | 93-283 |
| Cow position: | chr11:23877460-23877270 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-283 |
| Cow position: | chr11:24393477-24393285 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 93-283 |
| Cow position: | chr11:26124771-26124963 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 160 |
| Conread position: | 93-285 |
| Cow position: | chr11:19102329-19102522 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-292 |
| Cow position: | chr11:84389784-84389584 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 93-320 |
| Cow position: | chr11:62229344-62229133 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 93-342 |
| Cow position: | chr11:66727530-66727274 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 170 |
| Conread position: | 93-380 |
| Cow position: | chr11:11677501-11677214 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 93-397 |
| Cow position: | chr11:52885893-52886199 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 152, 64 |
| Conread position: | 93-399 |
| Cow position: | chr11:8283629-8283302 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 303 |
| Conread position: | 93-399 |
| Cow position: | chr11:28063998-28063684 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 290 |
| Conread position: | 94-267 |
| Cow position: | chr11:5343068-5343243 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 96-285 |
| Cow position: | chr11:85393658-85393847 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 96-397 |
| Cow position: | chr11:28049051-28049356 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 183, 42 |
| Conread position: | 96-399 |
| Cow position: | chr11:10090830-10090516 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 287 |
| Conread position: | 97-399 |
| Cow position: | chr11:59369973-59369663 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 165 |
| Conread position: | 98-210 |
| Cow position: | chr11:63655192-63655304 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 98-222 |
| Cow position: | chr11:64081938-64082062 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 120 |
| Conread position: | 98-224 |
| Cow position: | chr11:20734097-20734224 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-245 |
| Cow position: | chr11:3493156-3493008 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-245 |
| Cow position: | chr11:38505461-38505608 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-245 |
| Cow position: | chr11:57627902-57628049 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 80 |
| Conread position: | 98-266 |
| Cow position: | chr11:15983770-15983600 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr11:17107541-17107710 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr11:19064104-19064273 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr11:28229612-28229781 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr11:33194409-33194577 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 98-266 |
| Cow position: | chr11:67450643-67450474 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr11:67846426-67846595 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-267 |
| Cow position: | chr11:36744036-36744206 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 98-267 |
| Cow position: | chr11:61400906-61401077 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr11:28108295-28108124 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr11:64046143-64045972 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr11:73477453-73477282 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-293 |
| Cow position: | chr11:9734517-9734712 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 99-266 |
| Cow position: | chr11:54209761-54209595 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 101-277 |
| Cow position: | chr11:31874626-31874805 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 101-279 |
| Cow position: | chr11:9606435-9606613 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 102-215 |
| Cow position: | chr11:45111764-45111650 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 102-254 |
| Cow position: | chr11:4040947-4041100 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 102-283 |
| Cow position: | chr11:22934939-22934767 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 105-386 |
| Cow position: | chr11:87128927-87128642 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 119-342 |
| Cow position: | chr11:44495319-44495546 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 39, 216 |
| Conread position: | 121-403 |
| Cow position: | chr11:9219839-9220116 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 125-399 |
| Cow position: | chr11:8261423-8261697 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 126-395 |
| Cow position: | chr11:39802566-39802290 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 32, 253 |
| Conread position: | 134-290 |
| Cow position: | chr11:30125129-30125286 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 150 |
| Conread position: | 134-425 |
| Cow position: | chr11:30124303-30124603 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 230 |
| Conread position: | 138-275 |
| Cow position: | chr11:75920513-75920376 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 141-275 |
| Cow position: | chr11:8887050-8887184 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 141-275 |
| Cow position: | chr11:12350956-12351091 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 148-271 |
| Cow position: | chr11:8520093-8519968 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 148-283 |
| Cow position: | chr11:37065013-37065150 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 149-275 |
| Cow position: | chr11:256085-256213 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 149-283 |
| Cow position: | chr11:30305349-30305213 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.