Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 90-301 |
| Cow position: | chr13:11063948-11064155 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 186, 66 |
| Conread position: | 92-268 |
| Cow position: | chr13:32737603-32737774 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 92-298 |
| Cow position: | chr13:31556497-31556697 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 93-204 |
| Cow position: | chr13:31612086-31612198 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-204 |
| Cow position: | chr13:32545599-32545487 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-210 |
| Cow position: | chr13:15450890-15451006 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 93-214 |
| Cow position: | chr13:34910942-34911063 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 93-266 |
| Cow position: | chr13:3654098-3654274 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 140 |
| Conread position: | 93-267 |
| Cow position: | chr13:15924161-15924335 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr13:1592934-1593109 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr13:34325339-34325517 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 93-270 |
| Cow position: | chr13:30238468-30238290 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-271 |
| Cow position: | chr13:35757464-35757287 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 147 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 134 |
| Conread position: | 93-275 |
| Cow position: | chr13:6667897-6668080 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr13:23003086-23003269 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr13:30303498-30303316 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 93-275 |
| Cow position: | chr13:34042146-34042329 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-283 |
| Cow position: | chr13:33336203-33336385 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 93-285 |
| Cow position: | chr13:9044723-9044530 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-286 |
| Cow position: | chr13:34868965-34868771 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-303 |
| Cow position: | chr13:22766248-22766042 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 93-377 |
| Cow position: | chr13:22185015-22185295 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 93-382 |
| Cow position: | chr13:27922004-27922299 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 161 |
| Conread position: | 93-394 |
| Cow position: | chr13:43982860-43983167 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 93-399 |
| Cow position: | chr13:34937712-34937402 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 93-401 |
| Cow position: | chr13:20541814-20542138 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 294 |
| Conread position: | 95-258 |
| Cow position: | chr13:3057896-3058060 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-266 |
| Cow position: | chr13:31733872-31734043 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 96-268 |
| Cow position: | chr13:4941301-4941136 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 96-269 |
| Cow position: | chr13:32985133-32985306 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 164 |
| Conread position: | 96-275 |
| Cow position: | chr13:30656762-30656937 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 155, 62 |
| Conread position: | 96-405 |
| Cow position: | chr13:26844305-26844015 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 42 |
| Conread position: | 98-209 |
| Cow position: | chr13:58118697-58118808 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 98-215 |
| Cow position: | chr13:41316070-41315952 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr13:2388607-2388768 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr13:17308684-17308525 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 98-258 |
| Cow position: | chr13:21839987-21840144 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 98-258 |
| Cow position: | chr13:49973895-49973734 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 98-265 |
| Cow position: | chr13:50109671-50109504 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 98-265 |
| Cow position: | chr13:60466547-60466379 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 98-266 |
| Cow position: | chr13:13324960-13324791 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr13:30244467-30244636 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 98-266 |
| Cow position: | chr13:47229790-47229959 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 101-264 |
| Cow position: | chr13:2296608-2296769 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 102-268 |
| Cow position: | chr13:4484009-4483842 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 102-387 |
| Cow position: | chr13:19413434-19413154 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 110-425 |
| Cow position: | chr13:48357768-48357454 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 118-283 |
| Cow position: | chr13:11799558-11799727 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 124-275 |
| Cow position: | chr13:34693358-34693205 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 128-388 |
| Cow position: | chr13:34766685-34766944 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 141-266 |
| Cow position: | chr13:2908257-2908384 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 147-296 |
| Cow position: | chr13:4178481-4178629 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 148-279 |
| Cow position: | chr13:34142494-34142627 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 206-399 |
| Cow position: | chr13:15451131-15451319 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 113, 53 |
Show alignments to all cow chromosomes.