Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 92-223 |
| Cow position: | chr14:29777404-29777536 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 92-268 |
| Cow position: | chr14:11154066-11154242 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 69, 158 |
| Conread position: | 92-275 |
| Cow position: | chr14:45161197-45161013 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 93-210 |
| Cow position: | chr14:45206409-45206291 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 93-214 |
| Cow position: | chr14:50138690-50138569 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-215 |
| Cow position: | chr14:38531640-38531763 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 93-219 |
| Cow position: | chr14:45917741-45917613 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 93-220 |
| Cow position: | chr14:48825392-48825264 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-265 |
| Cow position: | chr14:44686142-44685969 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-266 |
| Cow position: | chr14:13621046-13621217 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 93-267 |
| Cow position: | chr14:7472458-7472293 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 93-267 |
| Cow position: | chr14:12742973-12743143 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 149 |
| Conread position: | 93-267 |
| Cow position: | chr14:20782555-20782381 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 145 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 157 |
| Conread position: | 93-268 |
| Cow position: | chr14:5511921-5511746 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr14:16919591-16919766 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 93-268 |
| Cow position: | chr14:17000963-17001138 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr14:17685495-17685320 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 93-268 |
| Cow position: | chr14:22031323-22031501 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-268 |
| Cow position: | chr14:28993755-28993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 68, 149 |
| Conread position: | 93-268 |
| Cow position: | chr14:48254204-48254381 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 93-269 |
| Cow position: | chr14:13303121-13302944 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 93-269 |
| Cow position: | chr14:30596285-30596464 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 93-269 |
| Cow position: | chr14:45834243-45834070 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 93-275 |
| Cow position: | chr14:44287152-44287334 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 155 |
| Conread position: | 93-275 |
| Cow position: | chr14:45081142-45080961 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 93-275 |
| Cow position: | chr14:45711891-45712077 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 93-275 |
| Cow position: | chr14:50110666-50110482 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-276 |
| Cow position: | chr14:16273204-16273381 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 93-276 |
| Cow position: | chr14:44226493-44226310 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 93-283 |
| Cow position: | chr14:5529160-5528972 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 93-283 |
| Cow position: | chr14:19328171-19328358 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 137 |
| Conread position: | 93-285 |
| Cow position: | chr14:37223998-37223807 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 93-288 |
| Cow position: | chr14:46465175-46464982 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 93-299 |
| Cow position: | chr14:35386714-35386920 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 160 |
| Conread position: | 93-347 |
| Cow position: | chr14:48970777-48970532 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 93-369 |
| Cow position: | chr14:33342230-33341949 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 155 |
| Conread position: | 93-403 |
| Cow position: | chr14:44377899-44377595 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 57 |
| Conread position: | 93-405 |
| Cow position: | chr14:37457308-37457629 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 93-434 |
| Cow position: | chr14:35423717-35423382 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 199, 65 |
| Conread position: | 94-396 |
| Cow position: | chr14:37413343-37413655 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 104, 95 |
| Conread position: | 95-245 |
| Cow position: | chr14:33393688-33393840 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 95-266 |
| Cow position: | chr14:9045656-9045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 95-286 |
| Cow position: | chr14:46474934-46474743 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 96-222 |
| Cow position: | chr14:43558065-43557940 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-365 |
| Cow position: | chr14:47923203-47922932 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 96-368 |
| Cow position: | chr14:41408980-41408697 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 96-378 |
| Cow position: | chr14:38815713-38816001 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 98-245 |
| Cow position: | chr14:750656-750509 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 98-247 |
| Cow position: | chr14:29047816-29047966 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr14:2284425-2284265 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 98-258 |
| Cow position: | chr14:45029037-45029198 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr14:17491370-17491538 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 98-266 |
| Cow position: | chr14:23257446-23257277 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr14:23900713-23900884 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 100-268 |
| Cow position: | chr14:13779046-13778879 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 101-286 |
| Cow position: | chr14:13863997-13864177 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 102-245 |
| Cow position: | chr14:30584870-30585013 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 102-265 |
| Cow position: | chr14:45671962-45672127 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 102-287 |
| Cow position: | chr14:17760810-17760995 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 102-342 |
| Cow position: | chr14:44775963-44776204 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 104-266 |
| Cow position: | chr14:19620308-19620145 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 104-392 |
| Cow position: | chr14:45302870-45303156 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 54 |
| Conread position: | 105-346 |
| Cow position: | chr14:13323785-13324031 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 118-437 |
| Cow position: | chr14:44256905-44257231 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 179 |
| Conread position: | 128-436 |
| Cow position: | chr14:41489580-41489898 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 130-386 |
| Cow position: | chr14:34776283-34776023 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 133-286 |
| Cow position: | chr14:5201022-5201176 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 135-275 |
| Cow position: | chr14:22242937-22242797 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 135-283 |
| Cow position: | chr14:15276523-15276670 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 136-386 |
| Cow position: | chr14:46519148-46518890 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 137-275 |
| Cow position: | chr14:42198892-42198754 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 141-275 |
| Cow position: | chr14:23690177-23690313 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 147-289 |
| Cow position: | chr14:44855378-44855520 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 96 |
| Conread position: | 148-275 |
| Cow position: | chr14:7830495-7830624 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 149-275 |
| Cow position: | chr14:13273289-13273163 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 203-389 |
| Cow position: | chr14:48825169-48824979 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 118, 155 |
| Conread position: | 213-368 |
| Cow position: | chr14:40339978-40339820 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 218-398 |
| Cow position: | chr14:12609576-12609394 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 102, 61 |
Show alignments to all cow chromosomes.