Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 91-298 |
| Cow position: | chr17:15384613-15384405 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 192 |
| Conread position: | 92-268 |
| Cow position: | chr17:14894485-14894309 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 69, 158 |
| Conread position: | 92-268 |
| Cow position: | chr17:19269036-19269210 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 93-209 |
| Cow position: | chr17:14051786-14051903 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 93-223 |
| Cow position: | chr17:15324152-15324021 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-224 |
| Cow position: | chr17:151548-151679 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 93-255 |
| Cow position: | chr17:5226947-5226784 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-266 |
| Cow position: | chr17:1880414-1880248 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 93-269 |
| Cow position: | chr17:250490-250310 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 93-269 |
| Cow position: | chr17:4060429-4060251 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 148 |
| Conread position: | 93-275 |
| Cow position: | chr17:3642506-3642688 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr17:6260173-6259992 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 93-275 |
| Cow position: | chr17:11087394-11087576 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr17:15850728-15850545 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr17:22132560-22132376 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr17:24029669-24029852 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-282 |
| Cow position: | chr17:6068885-6068701 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 93-283 |
| Cow position: | chr17:2579945-2579757 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 93-283 |
| Cow position: | chr17:25737993-25737805 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 149 |
| Conread position: | 93-283 |
| Cow position: | chr17:40805148-40804959 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-293 |
| Cow position: | chr17:16857195-16857395 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 93-298 |
| Cow position: | chr17:14040705-14040904 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 93-387 |
| Cow position: | chr17:18300070-18300370 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 93-387 |
| Cow position: | chr17:42265253-42264948 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 97-405 |
| Cow position: | chr17:4082387-4082066 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 98-214 |
| Cow position: | chr17:11376465-11376582 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr17:227989-228150 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr17:31767720-31767881 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr17:34156447-34156286 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr17:43952244-43952405 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr17:181680-181513 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 98-266 |
| Cow position: | chr17:6120027-6119858 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 98-266 |
| Cow position: | chr17:8209426-8209256 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 98-266 |
| Cow position: | chr17:14216707-14216876 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-267 |
| Cow position: | chr17:1382495-1382666 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr17:24634273-24634102 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-269 |
| Cow position: | chr17:15143048-15143220 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-269 |
| Cow position: | chr17:15156646-15156817 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 101-264 |
| Cow position: | chr17:20665410-20665576 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-269 |
| Cow position: | chr17:2248268-2248436 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 160 |
| Conread position: | 102-245 |
| Cow position: | chr17:24782482-24782338 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 102-258 |
| Cow position: | chr17:2262418-2262260 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 102-258 |
| Cow position: | chr17:15436106-15435949 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 102-266 |
| Cow position: | chr17:23324139-23324304 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 107-268 |
| Cow position: | chr17:18103370-18103529 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 121-270 |
| Cow position: | chr17:13856469-13856619 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 138-284 |
| Cow position: | chr17:6001129-6001274 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 141-265 |
| Cow position: | chr17:27346081-27345956 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 141-267 |
| Cow position: | chr17:602156-602284 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 141-270 |
| Cow position: | chr17:18185251-18185383 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 141-275 |
| Cow position: | chr17:20072962-20073098 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 147-283 |
| Cow position: | chr17:35592494-35592356 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 202-342 |
| Cow position: | chr17:14052016-14052156 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 239-449 |
| Cow position: | chr17:22558183-22557966 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 140 |
Show alignments to all cow chromosomes.