Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 89-369 |
| Cow position: | chr21:25975893-25975598 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 90-327 |
| Cow position: | chr21:23812793-23812553 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 200, 68 |
| Conread position: | 90-399 |
| Cow position: | chr21:29700-29405 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 92-393 |
| Cow position: | chr21:21925700-21926010 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 242 |
| Conread position: | 93-210 |
| Cow position: | chr21:27070649-27070767 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-213 |
| Cow position: | chr21:18819551-18819672 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-218 |
| Cow position: | chr21:47949677-47949552 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 93-224 |
| Cow position: | chr21:1287608-1287738 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 93-264 |
| Cow position: | chr21:2416826-2416660 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 93-264 |
| Cow position: | chr21:7266913-7267091 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-267 |
| Cow position: | chr21:467504-467333 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 93-267 |
| Cow position: | chr21:4589373-4589547 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 93-267 |
| Cow position: | chr21:10567287-10567113 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr21:10850695-10850521 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 93-268 |
| Cow position: | chr21:13313384-13313209 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 155 |
| Conread position: | 93-268 |
| Cow position: | chr21:28735848-28735672 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-268 |
| Cow position: | chr21:30562421-30562246 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr21:30599309-30599482 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 137 |
| Conread position: | 93-268 |
| Cow position: | chr21:31559041-31559212 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 93-268 |
| Cow position: | chr21:35144375-35144200 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr21:2673996-2674176 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 93-275 |
| Cow position: | chr21:3779387-3779202 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr21:40271062-40271245 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr21:48116719-48116537 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-285 |
| Cow position: | chr21:146541-146348 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 70, 157 |
| Conread position: | 93-285 |
| Cow position: | chr21:2883128-2883323 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 159 |
| Conread position: | 93-367 |
| Cow position: | chr21:20743891-20744162 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 93-394 |
| Cow position: | chr21:23861938-23861628 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 62, 288 |
| Conread position: | 93-396 |
| Cow position: | chr21:2711116-2710828 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 93-397 |
| Cow position: | chr21:359980-359675 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 93-401 |
| Cow position: | chr21:9892551-9892250 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 137 |
| Conread position: | 93-403 |
| Cow position: | chr21:2540469-2540780 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 96-283 |
| Cow position: | chr21:33252121-33251935 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 97-283 |
| Cow position: | chr21:27283001-27282815 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 153 |
| Conread position: | 98-255 |
| Cow position: | chr21:2511502-2511344 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr21:6340173-6340012 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr21:12055394-12055555 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr21:11506203-11506034 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr21:37371852-37371683 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-267 |
| Cow position: | chr21:2475934-2476105 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-267 |
| Cow position: | chr21:4091255-4091085 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 98-268 |
| Cow position: | chr21:11406389-11406560 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr21:11453049-11453220 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr21:26650648-26650477 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr21:37046227-37046056 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 100-369 |
| Cow position: | chr21:23603156-23602883 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 185, 58 |
| Conread position: | 101-267 |
| Cow position: | chr21:46916191-46916024 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 104-318 |
| Cow position: | chr21:21915294-21915075 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 104-405 |
| Cow position: | chr21:6110168-6109862 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 29, 232 |
| Conread position: | 115-348 |
| Cow position: | chr21:27565991-27565749 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 127-275 |
| Cow position: | chr21:2502475-2502326 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 130-386 |
| Cow position: | chr21:37324624-37324864 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 141-254 |
| Cow position: | chr21:35596996-35596882 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 147-275 |
| Cow position: | chr21:34293581-34293451 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 213-399 |
| Cow position: | chr21:4184331-4184141 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 165 |
Show alignments to all cow chromosomes.