Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 23-267 |
| Cow position: | chr6:12092388-12092634 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 89-386 |
| Cow position: | chr6:15477320-15477016 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 90-398 |
| Cow position: | chr6:8021343-8021024 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 71, 161 |
| Conread position: | 93-224 |
| Cow position: | chr6:40315797-40315666 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 93-230 |
| Cow position: | chr6:27471013-27470874 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 93-231 |
| Cow position: | chr6:14852169-14852308 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-243 |
| Cow position: | chr6:51086354-51086203 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-244 |
| Cow position: | chr6:65914608-65914458 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 93-255 |
| Cow position: | chr6:3889070-3889237 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-259 |
| Cow position: | chr6:28275396-28275225 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 38, 162 |
| Conread position: | 93-268 |
| Cow position: | chr6:5949366-5949539 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 93-268 |
| Cow position: | chr6:8202151-8201977 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 93-268 |
| Cow position: | chr6:8760890-8761065 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr6:24239469-24239305 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 93-268 |
| Cow position: | chr6:27529593-27529767 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 93-268 |
| Cow position: | chr6:30274764-30274939 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 68, 156 |
| Conread position: | 93-268 |
| Cow position: | chr6:34892591-34892766 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr6:39437961-39437787 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 93-268 |
| Cow position: | chr6:47042784-47042959 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr6:65881320-65881143 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-269 |
| Cow position: | chr6:36526463-36526287 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 93-269 |
| Cow position: | chr6:55543911-55544088 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 158 |
| Conread position: | 93-270 |
| Cow position: | chr6:25214669-25214490 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 149 |
| Conread position: | 93-274 |
| Cow position: | chr6:64715644-64715462 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr6:3277539-3277718 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 93-275 |
| Cow position: | chr6:30479518-30479331 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-275 |
| Cow position: | chr6:35876301-35876486 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr6:52693438-52693255 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr6:58027162-58026985 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 93-276 |
| Cow position: | chr6:17046468-17046285 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-283 |
| Cow position: | chr6:15140771-15140954 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 93-283 |
| Cow position: | chr6:15280143-15280326 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 93-285 |
| Cow position: | chr6:29311906-29311713 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-291 |
| Cow position: | chr6:65928378-65928179 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-293 |
| Cow position: | chr6:65842000-65841806 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-311 |
| Cow position: | chr6:43607289-43607500 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 35, 138 |
| Conread position: | 93-328 |
| Cow position: | chr6:20560698-20560931 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 70, 136 |
| Conread position: | 93-358 |
| Cow position: | chr6:38900753-38901028 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 220 |
| Conread position: | 93-388 |
| Cow position: | chr6:1822219-1822509 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 93-458 |
| Cow position: | chr6:7178866-7179223 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 93-459 |
| Cow position: | chr6:10643961-10643592 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 94-258 |
| Cow position: | chr6:28491107-28491272 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 95-244 |
| Cow position: | chr6:40275494-40275344 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 95-258 |
| Cow position: | chr6:58408506-58408670 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-222 |
| Cow position: | chr6:25794179-25794053 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 96-270 |
| Cow position: | chr6:4508014-4508189 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 97-318 |
| Cow position: | chr6:44550681-44550912 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 98-204 |
| Cow position: | chr6:26670464-26670571 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-243 |
| Cow position: | chr6:28105447-28105590 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 98-245 |
| Cow position: | chr6:1411540-1411685 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 109 |
| Conread position: | 98-245 |
| Cow position: | chr6:13847429-13847280 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 98-258 |
| Cow position: | chr6:2375104-2374942 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr6:27169984-27169823 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr6:40252064-40251905 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 98-266 |
| Cow position: | chr6:13104460-13104292 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 98-266 |
| Cow position: | chr6:17597887-17598045 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 98-266 |
| Cow position: | chr6:39908930-39908761 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr6:43618118-43617949 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr6:24322978-24323149 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr6:69221807-69221978 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-269 |
| Cow position: | chr6:10499321-10499492 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 98-270 |
| Cow position: | chr6:331063-331236 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 101-265 |
| Cow position: | chr6:65821720-65821892 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 101-266 |
| Cow position: | chr6:13944307-13944141 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-266 |
| Cow position: | chr6:44150156-44150322 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-267 |
| Cow position: | chr6:40867154-40867321 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 150 |
| Conread position: | 101-275 |
| Cow position: | chr6:6567013-6566837 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 102-266 |
| Cow position: | chr6:28063735-28063570 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 102-266 |
| Cow position: | chr6:68027189-68027026 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 102-403 |
| Cow position: | chr6:35419453-35419723 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 103-244 |
| Cow position: | chr6:16052277-16052135 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 108-255 |
| Cow position: | chr6:26044922-26044767 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 111-459 |
| Cow position: | chr6:6475762-6476112 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 47 |
| Conread position: | 121-268 |
| Cow position: | chr6:702337-702190 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 129 |
| Conread position: | 131-275 |
| Cow position: | chr6:914030-913885 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 141-266 |
| Cow position: | chr6:65008052-65007927 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 17 |
| Conread position: | 141-275 |
| Cow position: | chr6:19454283-19454147 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 146-293 |
| Cow position: | chr6:40554219-40554365 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 148-275 |
| Cow position: | chr6:33389203-33389074 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 148-276 |
| Cow position: | chr6:42927697-42927567 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 149-266 |
| Cow position: | chr6:59918926-59919044 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 176-449 |
| Cow position: | chr6:42616792-42616507 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 202-300 |
| Cow position: | chr6:38232900-38232803 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.