Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 52-399 |
| Cow position: | chr7:39107374-39107731 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 91-400 |
| Cow position: | chr7:51014775-51014460 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 110 |
| Conread position: | 92-286 |
| Cow position: | chr7:8144739-8144933 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 92-292 |
| Cow position: | chr7:26852171-26851967 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 92-368 |
| Cow position: | chr7:63950919-63951194 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 93-214 |
| Cow position: | chr7:525476-525353 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 93-224 |
| Cow position: | chr7:53991700-53991573 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 93-225 |
| Cow position: | chr7:64241288-64241419 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 93-241 |
| Cow position: | chr7:54195289-54195428 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 93-245 |
| Cow position: | chr7:38536902-38536749 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-266 |
| Cow position: | chr7:39792262-39792087 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 93-267 |
| Cow position: | chr7:446129-446300 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-267 |
| Cow position: | chr7:10430920-10431087 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 93-267 |
| Cow position: | chr7:19924320-19924496 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 151 |
| Conread position: | 93-267 |
| Cow position: | chr7:21985906-21985730 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 93-267 |
| Cow position: | chr7:25250604-25250430 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 157 |
| Conread position: | 93-267 |
| Cow position: | chr7:34486419-34486245 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 157 |
| Conread position: | 93-267 |
| Cow position: | chr7:46901577-46901750 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 93-268 |
| Cow position: | chr7:1372143-1372322 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 161 |
| Conread position: | 93-268 |
| Cow position: | chr7:13537081-13537254 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 93-268 |
| Cow position: | chr7:14139096-14139271 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 70, 157 |
| Conread position: | 93-268 |
| Cow position: | chr7:21234507-21234682 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 93-268 |
| Cow position: | chr7:34149603-34149428 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr7:45948648-45948822 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 93-270 |
| Cow position: | chr7:33405737-33405916 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 66, 157 |
| Conread position: | 93-270 |
| Cow position: | chr7:55537418-55537592 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 93-275 |
| Cow position: | chr7:5183910-5183727 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-275 |
| Cow position: | chr7:5662873-5662695 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 93-275 |
| Cow position: | chr7:21929645-21929464 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 93-275 |
| Cow position: | chr7:24807953-24808143 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 62, 165 |
| Conread position: | 93-275 |
| Cow position: | chr7:27787135-27786942 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 93-276 |
| Cow position: | chr7:54603355-54603173 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 93-315 |
| Cow position: | chr7:21127160-21127380 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 190, 65 |
| Conread position: | 93-342 |
| Cow position: | chr7:29470960-29470718 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 93-346 |
| Cow position: | chr7:1404104-1404356 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 93-350 |
| Cow position: | chr7:21310987-21310741 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 229, 6 |
| Conread position: | 93-399 |
| Cow position: | chr7:29369793-29370075 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 221, 58 |
| Conread position: | 93-402 |
| Cow position: | chr7:68908821-68908509 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 138 |
| Conread position: | 93-406 |
| Cow position: | chr7:48634937-48634623 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 93-417 |
| Cow position: | chr7:4415878-4415544 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 94-310 |
| Cow position: | chr7:12493494-12493715 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 95-257 |
| Cow position: | chr7:1450872-1450715 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 135 |
| Conread position: | 95-258 |
| Cow position: | chr7:3300660-3300824 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-267 |
| Cow position: | chr7:68232437-68232268 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 96-350 |
| Cow position: | chr7:23837066-23836806 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 145 |
| Conread position: | 96-387 |
| Cow position: | chr7:20821208-20820924 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 96-399 |
| Cow position: | chr7:58994091-58993781 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 98-200 |
| Cow position: | chr7:11466277-11466381 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-222 |
| Cow position: | chr7:60794809-60794934 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-244 |
| Cow position: | chr7:3234190-3234337 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-245 |
| Cow position: | chr7:61808725-61808577 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-258 |
| Cow position: | chr7:20515279-20515440 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr7:6648163-6648332 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr7:20798953-20799122 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr7:43830532-43830703 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr7:61559706-61559535 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-269 |
| Cow position: | chr7:16379-16550 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 98-269 |
| Cow position: | chr7:21320649-21320478 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 98-275 |
| Cow position: | chr7:67799350-67799173 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 99-234 |
| Cow position: | chr7:995016-994879 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 101-246 |
| Cow position: | chr7:59679343-59679200 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 101-266 |
| Cow position: | chr7:11447047-11446880 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-266 |
| Cow position: | chr7:25440000-25439834 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-268 |
| Cow position: | chr7:60463639-60463471 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 102-284 |
| Cow position: | chr7:24057927-24057749 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 132, 9 |
| Conread position: | 102-386 |
| Cow position: | chr7:58377271-58377562 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 104-368 |
| Cow position: | chr7:59683764-59683503 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 107-245 |
| Cow position: | chr7:6642395-6642532 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 110-387 |
| Cow position: | chr7:55279857-55280124 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 162 |
| Conread position: | 114-397 |
| Cow position: | chr7:1734307-1734598 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 118-423 |
| Cow position: | chr7:54644036-54644340 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 135 |
| Conread position: | 141-266 |
| Cow position: | chr7:35296814-35296939 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 141-275 |
| Cow position: | chr7:1610754-1610889 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 148-275 |
| Cow position: | chr7:21975296-21975425 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 160-339 |
| Cow position: | chr7:26894212-26894036 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 119 |
| Conread position: | 162-460 |
| Cow position: | chr7:3155551-3155250 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 115, 97 |
| Conread position: | 185-292 |
| Cow position: | chr7:9138857-9138750 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-399 |
| Cow position: | chr7:67426734-67426536 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 36, 161 |
| Conread position: | 207-411 |
| Cow position: | chr7:6488079-6488279 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 111, 70 |
Show alignments to all cow chromosomes.