Cow genome map
| Conread name: | Lym2-sn47_F07.f |
| Conread position: | 23-379 |
| Cow position: | chr9:63854991-63854626 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 91-318 |
| Cow position: | chr9:20308805-20309030 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 92-318 |
| Cow position: | chr9:42556266-42556033 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 93-212 |
| Cow position: | chr9:31807908-31807789 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 107 |
| Conread position: | 93-265 |
| Cow position: | chr9:1995571-1995743 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 93-267 |
| Cow position: | chr9:7003126-7002952 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-267 |
| Cow position: | chr9:59444194-59444020 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 93-268 |
| Cow position: | chr9:9013441-9013267 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 93-268 |
| Cow position: | chr9:10322143-10321977 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 93-268 |
| Cow position: | chr9:27035023-27034849 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 136 |
| Conread position: | 93-268 |
| Cow position: | chr9:29027861-29028032 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 93-268 |
| Cow position: | chr9:37970867-37971042 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr9:47002533-47002358 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-268 |
| Cow position: | chr9:60277679-60277853 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 93-269 |
| Cow position: | chr9:42569244-42569066 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-270 |
| Cow position: | chr9:5004322-5004159 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 93-270 |
| Cow position: | chr9:7061751-7061927 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 128 |
| Conread position: | 93-270 |
| Cow position: | chr9:42310025-42309848 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-275 |
| Cow position: | chr9:3566498-3566691 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 93-275 |
| Cow position: | chr9:6050707-6050887 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 93-275 |
| Cow position: | chr9:6830166-6830348 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 93-275 |
| Cow position: | chr9:22653910-22653727 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 93-276 |
| Cow position: | chr9:28022142-28021951 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 93-283 |
| Cow position: | chr9:4532835-4532646 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-283 |
| Cow position: | chr9:30672710-30672520 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 93-283 |
| Cow position: | chr9:37162471-37162660 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 93-285 |
| Cow position: | chr9:18509458-18509652 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 93-285 |
| Cow position: | chr9:51181847-51182043 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 93-285 |
| Cow position: | chr9:59173809-59174009 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 93-293 |
| Cow position: | chr9:1980328-1980130 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 93-324 |
| Cow position: | chr9:2171400-2171167 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 93-410 |
| Cow position: | chr9:4282115-4281789 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 93-459 |
| Cow position: | chr9:3803681-3803313 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 93-460 |
| Cow position: | chr9:13476543-13476920 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 288 |
| Conread position: | 95-215 |
| Cow position: | chr9:59454925-59455046 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 95-258 |
| Cow position: | chr9:25754888-25755052 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 96-214 |
| Cow position: | chr9:3543179-3543060 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 96-266 |
| Cow position: | chr9:25484205-25484034 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 96-266 |
| Cow position: | chr9:45873680-45873510 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 96-267 |
| Cow position: | chr9:2487800-2487967 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 96-268 |
| Cow position: | chr9:16176108-16175936 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 65, 154 |
| Conread position: | 96-275 |
| Cow position: | chr9:59536431-59536256 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 96-399 |
| Cow position: | chr9:44818517-44818225 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 62 |
| Conread position: | 96-400 |
| Cow position: | chr9:1636287-1635996 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 138 |
| Conread position: | 96-419 |
| Cow position: | chr9:3354344-3354671 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 96-435 |
| Cow position: | chr9:59426109-59425749 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 292 |
| Conread position: | 97-449 |
| Cow position: | chr9:28688442-28688070 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 34, 290 |
| Conread position: | 98-215 |
| Cow position: | chr9:50791046-50790928 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-242 |
| Cow position: | chr9:28440141-28439996 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-248 |
| Cow position: | chr9:1251662-1251813 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 98-258 |
| Cow position: | chr9:780472-780633 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-265 |
| Cow position: | chr9:3005912-3006081 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr9:222196-222363 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 98-266 |
| Cow position: | chr9:17064055-17064220 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 131 |
| Conread position: | 98-266 |
| Cow position: | chr9:25035513-25035682 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-266 |
| Cow position: | chr9:27934420-27934252 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 98-266 |
| Cow position: | chr9:28678305-28678136 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-267 |
| Cow position: | chr9:25022965-25023131 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 98-267 |
| Cow position: | chr9:51211014-51210843 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr9:163171-163342 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr9:31064765-31064594 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-268 |
| Cow position: | chr9:49177495-49177666 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 98-269 |
| Cow position: | chr9:36724834-36724663 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 98-269 |
| Cow position: | chr9:64018129-64018300 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 163 |
| Conread position: | 101-245 |
| Cow position: | chr9:1075868-1076013 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-248 |
| Cow position: | chr9:30827010-30826863 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 101-266 |
| Cow position: | chr9:60651383-60651549 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 101-267 |
| Cow position: | chr9:16268701-16268533 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 105-266 |
| Cow position: | chr9:130863-131026 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 110-283 |
| Cow position: | chr9:29628423-29628592 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 113-275 |
| Cow position: | chr9:2186288-2186127 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 121-419 |
| Cow position: | chr9:30487868-30487564 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 216 |
| Conread position: | 129-326 |
| Cow position: | chr9:9705869-9705669 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 131-271 |
| Cow position: | chr9:34242300-34242444 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 137-397 |
| Cow position: | chr9:64119528-64119265 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 21, 238 |
| Conread position: | 139-459 |
| Cow position: | chr9:2000704-2001027 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 141-265 |
| Cow position: | chr9:31021115-31020992 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 143-264 |
| Cow position: | chr9:3156315-3156193 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 146-383 |
| Cow position: | chr9:2204332-2204102 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 182, 12 |
| Conread position: | 157-267 |
| Cow position: | chr9:9985670-9985560 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 55 |
| Conread position: | 210-399 |
| Cow position: | chr9:34721700-34721502 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 77, 174 |
| Conread position: | 212-392 |
| Cow position: | chr9:44795294-44795110 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 107, 167 |
| Conread position: | 213-423 |
| Cow position: | chr9:43663780-43663568 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 101 |
Show alignments to all cow chromosomes.