Cow genome map
| Conread name: | Lym2-sn57_H04.f |
| Conread position: | 95-612 |
| Cow position: | chr1:24235379-24235892 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 96-607 |
| Cow position: | chr1:74822579-74822081 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 148-498 |
| Cow position: | chr1:80900202-80899847 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 100, 72 |
| Conread position: | 149-466 |
| Cow position: | chr1:89076552-89076865 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 156, 71 |
| Conread position: | 149-581 |
| Cow position: | chr1:69694912-69695350 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 156, 55 |
| Conread position: | 149-605 |
| Cow position: | chr1:57575683-57576130 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 79 |
| Conread position: | 153-525 |
| Cow position: | chr1:81613466-81613097 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 67 |
| Conread position: | 154-604 |
| Cow position: | chr1:82936521-82936951 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 66 |
| Conread position: | 155-448 |
| Cow position: | chr1:26178736-26179025 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 155-470 |
| Cow position: | chr1:10942019-10942325 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 155-470 |
| Cow position: | chr1:10964367-10964061 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 155-539 |
| Cow position: | chr1:874729-874341 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 155-587 |
| Cow position: | chr1:96478775-96478331 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 155-588 |
| Cow position: | chr1:70297353-70296917 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 119, 75 |
| Conread position: | 155-604 |
| Cow position: | chr1:26895736-26896190 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 175 |
| Conread position: | 155-604 |
| Cow position: | chr1:91816696-91817138 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 155-604 |
| Cow position: | chr1:92370294-92370724 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 155-605 |
| Cow position: | chr1:46693579-46694024 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 65 |
| Conread position: | 155-605 |
| Cow position: | chr1:63595979-63596427 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 59 |
| Conread position: | 155-638 |
| Cow position: | chr1:52753085-52753566 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 156-466 |
| Cow position: | chr1:89381349-89381050 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 156-604 |
| Cow position: | chr1:81568954-81569404 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 64 |
| Conread position: | 159-618 |
| Cow position: | chr1:85774528-85774081 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 142, 89 |
| Conread position: | 160-433 |
| Cow position: | chr1:6788213-6788485 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 160-445 |
| Cow position: | chr1:62036872-62036593 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 152, 59 |
| Conread position: | 160-487 |
| Cow position: | chr1:70538681-70538353 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 160-487 |
| Cow position: | chr1:78857259-78857572 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 145, 60 |
| Conread position: | 160-489 |
| Cow position: | chr1:5135640-5135943 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 203, 70 |
| Conread position: | 160-525 |
| Cow position: | chr1:25383738-25383374 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 88 |
| Conread position: | 160-544 |
| Cow position: | chr1:41056748-41056377 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 160-546 |
| Cow position: | chr1:12464594-12464962 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 145, 60 |
| Conread position: | 160-549 |
| Cow position: | chr1:33331024-33331382 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 145, 25 |
| Conread position: | 160-604 |
| Cow position: | chr1:38277958-38278399 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 160-605 |
| Cow position: | chr1:84811869-84812318 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 160-607 |
| Cow position: | chr1:56229308-56228883 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 60 |
| Conread position: | 160-612 |
| Cow position: | chr1:52039706-52039263 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 160-612 |
| Cow position: | chr1:92963465-92963016 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 161-456 |
| Cow position: | chr1:98030992-98030696 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 67 |
| Conread position: | 161-603 |
| Cow position: | chr1:101634781-101634339 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 163-377 |
| Cow position: | chr1:87440535-87440325 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 209-604 |
| Cow position: | chr1:71946349-71946731 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 230-490 |
| Cow position: | chr1:14379529-14379783 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 231-497 |
| Cow position: | chr1:3661062-3661316 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 244-430 |
| Cow position: | chr1:102113115-102113301 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 249-604 |
| Cow position: | chr1:52206663-52206325 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 114, 65 |
| Conread position: | 261-605 |
| Cow position: | chr1:72034950-72035297 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 83 |
Show alignments to all cow chromosomes.