Cow genome map

Conread name: Lym2-sn61_H07.f

Conread position: 32-206
Cow position: chr1:81471560-81471386 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 40, 133

Conread position: 58-196
Cow position: chr1:96362244-96362385 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 13

Conread position: 65-212
Cow position: chr1:78066358-78066512 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 75-240
Cow position: chr1:19304733-19304565 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 104

Conread position: 77-222
Cow position: chr1:80336088-80336234 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 19

Conread position: 82-241
Cow position: chr1:52039799-52039630 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 29, 115

Conread position: 83-195
Cow position: chr1:84787426-84787312 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 101
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 83-241
Cow position: chr1:64113635-64113799 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 83-244
Cow position: chr1:37321846-37322008 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 108

Conread position: 84-240
Cow position: chr1:97090485-97090319 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 7, 143

Conread position: 87-239
Cow position: chr1:6972677-6972520 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 87-241
Cow position: chr1:85339538-85339385 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 114

Conread position: 88-183
Cow position: chr1:100552126-100552029 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 88
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 88-194
Cow position: chr1:37470651-37470544 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 98

Conread position: 88-195
Cow position: chr1:31627998-31627891 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 80

Conread position: 88-195
Cow position: chr1:72011662-72011771 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 88-205
Cow position: chr1:87934120-87934239 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 10

Conread position: 88-206
Cow position: chr1:52370021-52370140 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 104

Conread position: 88-206
Cow position: chr1:54478476-54478360 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 88-206
Cow position: chr1:61011335-61011212 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 88-213
Cow position: chr1:34159988-34159859 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 88-223
Cow position: chr1:20537362-20537219 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 88-240
Cow position: chr1:51860404-51860568 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 88-240
Cow position: chr1:69264957-69264803 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 137, 0

Conread position: 88-241
Cow position: chr1:78838947-78838788 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 88-241
Cow position: chr1:86340319-86340472 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 8

Conread position: 89-239
Cow position: chr1:42868786-42868942 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 134

Conread position: 90-207
Cow position: chr1:39224781-39224896 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 90-216
Cow position: chr1:70044502-70044376 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 113

Conread position: 90-222
Cow position: chr1:81638700-81638563 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 90-239
Cow position: chr1:72105561-72105406 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 126

Conread position: 90-240
Cow position: chr1:82880789-82880639 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 126, 25

Conread position: 90-240
Cow position: chr1:97611506-97611667 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 93-223
Cow position: chr1:63905109-63905245 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 95-240
Cow position: chr1:4291308-4291159 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 98-197
Cow position: chr1:41022558-41022459 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 98-205
Cow position: chr1:22828431-22828538 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 98-222
Cow position: chr1:25021936-25022060 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 98-241
Cow position: chr1:41027214-41027067 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 98-241
Cow position: chr1:81481243-81481390 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 119, 0

Conread position: 98-241
Cow position: chr1:93044156-93044013 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 119

Conread position: 98-243
Cow position: chr1:11729314-11729165 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 102-201
Cow position: chr1:53402916-53402817 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 102-206
Cow position: chr1:67539694-67539591 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 102-213
Cow position: chr1:45673889-45673778 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 102-220
Cow position: chr1:23372993-23372876 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 102-222
Cow position: chr1:54157431-54157311 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 102-240
Cow position: chr1:43352521-43352661 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 102-240
Cow position: chr1:54258701-54258560 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 115, 64

Conread position: 102-240
Cow position: chr1:95153006-95152864 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 102-240
Cow position: chr1:100474369-100474227 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 102-240
Cow position: chr1:101280603-101280741 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 126, 102

Conread position: 104-240
Cow position: chr1:22824038-22823898 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 105-206
Cow position: chr1:94823260-94823361 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 108-220
Cow position: chr1:84768750-84768862 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 109-196
Cow position: chr1:45873942-45874029 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-206
Cow position: chr1:69411569-69411666 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-206
Cow position: chr1:78697644-78697741 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-213
Cow position: chr1:874782-874678 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-213
Cow position: chr1:22461110-22461214 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 109-213
Cow position: chr1:72813744-72813640 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 109-222
Cow position: chr1:43148417-43148530 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-222
Cow position: chr1:55230104-55229991 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-222
Cow position: chr1:57359590-57359477 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-223
Cow position: chr1:98556991-98557107 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 109-233
Cow position: chr1:6731308-6731180 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 109-239
Cow position: chr1:5597083-5597214 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 109-239
Cow position: chr1:45315508-45315642 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 109-240
Cow position: chr1:42178873-42178738 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 109-240
Cow position: chr1:43311643-43311779 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 109-240
Cow position: chr1:55428828-55428964 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 109-240
Cow position: chr1:68672474-68672604 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 109-240
Cow position: chr1:72068706-72068842 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 109-240
Cow position: chr1:81580305-81580171 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 80

Conread position: 109-240
Cow position: chr1:85549951-85550085 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 110, 14

Conread position: 109-240
Cow position: chr1:95835670-95835805 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 109-241
Cow position: chr1:43388924-43389056 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 93, 108

Conread position: 109-241
Cow position: chr1:87197948-87197812 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 109-241
Cow position: chr1:95974527-95974392 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 106, 9

Conread position: 109-241
Cow position: chr1:98512054-98511919 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 106, 33

Conread position: 109-243
Cow position: chr1:32014324-32014188 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 0

Conread position: 109-243
Cow position: chr1:95153350-95153213 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 110-196
Cow position: chr1:76080932-76080848 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 78
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 110-223
Cow position: chr1:47886353-47886467 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 111-243
Cow position: chr1:81613515-81613379 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 111-243
Cow position: chr1:88913445-88913310 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 71

Conread position: 112-213
Cow position: chr1:46100715-46100816 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 112-240
Cow position: chr1:98576172-98576040 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 113-213
Cow position: chr1:31630163-31630263 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 114-202
Cow position: chr1:77685858-77685946 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 114-240
Cow position: chr1:75250233-75250108 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 115-196
Cow position: chr1:731851-731932 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 74
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 115-212
Cow position: chr1:42775032-42774935 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 115-241
Cow position: chr1:48206414-48206539 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 118-237
Cow position: chr1:100706245-100706127 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 119-241
Cow position: chr1:19515501-19515627 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 353-507
Cow position: chr1:61560805-61560648 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.