Cow genome map

Conread name: Lym2-sn61_H07.f

Conread position: 61-241
Cow position: chr18:47512147-47511959 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 62-228
Cow position: chr18:53962292-53962456 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 48

Conread position: 68-241
Cow position: chr18:49017629-49017458 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 104

Conread position: 74-196
Cow position: chr18:38228537-38228409 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 83-241
Cow position: chr18:33300015-33299857 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 125, 40

Conread position: 83-243
Cow position: chr18:15809685-15809849 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 105

Conread position: 83-243
Cow position: chr18:52877474-52877312 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 42

Conread position: 85-241
Cow position: chr18:49100261-49100415 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 33

Conread position: 87-196
Cow position: chr18:44205967-44206082 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 87-213
Cow position: chr18:14586357-14586485 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 87-240
Cow position: chr18:30586114-30586267 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 130

Conread position: 87-241
Cow position: chr18:44262745-44262584 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 88-194
Cow position: chr18:36098479-36098370 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 88-206
Cow position: chr18:51691345-51691470 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 88-213
Cow position: chr18:33492472-33492345 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 88-239
Cow position: chr18:20641380-20641541 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 88-240
Cow position: chr18:42427737-42427574 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 5

Conread position: 88-240
Cow position: chr18:50359446-50359286 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 88-241
Cow position: chr18:18569099-18568956 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 88-243
Cow position: chr18:19849650-19849802 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 125, 48

Conread position: 90-240
Cow position: chr18:10322915-10322760 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 90-243
Cow position: chr18:48713661-48713502 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 93-241
Cow position: chr18:23630499-23630651 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 124

Conread position: 98-213
Cow position: chr18:5632368-5632253 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 98-213
Cow position: chr18:24022718-24022603 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 98-235
Cow position: chr18:12273758-12273617 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 98-240
Cow position: chr18:24759556-24759702 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 98-241
Cow position: chr18:1571137-1571282 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 98-241
Cow position: chr18:49038562-49038415 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 116, 0

Conread position: 99-222
Cow position: chr18:39460319-39460196 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 100-238
Cow position: chr18:5711555-5711694 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 124, 0

Conread position: 100-241
Cow position: chr18:18844114-18843967 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 87

Conread position: 102-222
Cow position: chr18:23821736-23821856 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 102-224
Cow position: chr18:5189597-5189720 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 102-240
Cow position: chr18:7359841-7359699 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 120

Conread position: 102-241
Cow position: chr18:35874174-35874033 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 102-270
Cow position: chr18:23649019-23648854 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 123

Conread position: 108-213
Cow position: chr18:52589878-52589982 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 109-193
Cow position: chr18:2576611-2576695 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 109-196
Cow position: chr18:55123335-55123248 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 109-206
Cow position: chr18:47410632-47410535 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 109-213
Cow position: chr18:19273007-19273111 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 109-217
Cow position: chr18:24508142-24508252 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 109-222
Cow position: chr18:56159550-56159438 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 109-240
Cow position: chr18:3180500-3180365 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 103, 0

Conread position: 109-240
Cow position: chr18:16997343-16997208 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 109-240
Cow position: chr18:37023461-37023596 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 109-240
Cow position: chr18:51392554-51392685 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 109-241
Cow position: chr18:21768702-21768573 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 109-241
Cow position: chr18:38687169-38687037 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 94, 104

Conread position: 109-241
Cow position: chr18:44917848-44917710 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 109-266
Cow position: chr18:11262925-11262769 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 90
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 110-238
Cow position: chr18:4624062-4624191 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 110-240
Cow position: chr18:27109204-27109338 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 110-241
Cow position: chr18:28923761-28923894 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 14

Conread position: 111-241
Cow position: chr18:19883620-19883485 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 111-241
Cow position: chr18:46072550-46072416 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 113-240
Cow position: chr18:30341099-30341226 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 114-206
Cow position: chr18:27637576-27637484 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 114-240
Cow position: chr18:1954505-1954635 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 114-240
Cow position: chr18:52251773-52251903 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 114-241
Cow position: chr18:50082173-50082304 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 84, 108

Conread position: 114-245
Cow position: chr18:12584755-12584890 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 115-271
Cow position: chr18:11657739-11657581 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 69

Conread position: 346-503
Cow position: chr18:47511880-47512038 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 35

Show alignments to all cow chromosomes.