Cow genome map
| Conread name: | Mixc-0029c19 |
| Conread position: | 6-117 |
| Cow position: | chr1:49433303-49433189 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-120 |
| Cow position: | chr1:93554801-93554914 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-119 |
| Cow position: | chr1:21787303-21787413 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-119 |
| Cow position: | chr1:44506943-44507050 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 12-117 |
| Cow position: | chr1:77683323-77683427 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:5023792-5023685 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:6788313-6788206 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:7971381-7971489 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:37309552-37309442 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:45223551-45223658 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:45555336-45555443 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:78068099-78067992 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-119 |
| Cow position: | chr1:98511894-98512004 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 12-124 |
| Cow position: | chr1:34771532-34771421 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 13-117 |
| Cow position: | chr1:4032603-4032707 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-117 |
| Cow position: | chr1:96273051-96272948 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 13-119 |
| Cow position: | chr1:10778533-10778640 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 13-119 |
| Cow position: | chr1:88359849-88359955 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-119 |
| Cow position: | chr1:95974372-95974477 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 14-119 |
| Cow position: | chr1:11729148-11729252 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 14-119 |
| Cow position: | chr1:99071102-99071209 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 15-117 |
| Cow position: | chr1:54478302-54478404 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-119 |
| Cow position: | chr1:82880620-82880721 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 15-120 |
| Cow position: | chr1:53308416-53308314 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 16-119 |
| Cow position: | chr1:72068860-72068758 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 17-119 |
| Cow position: | chr1:61542943-61542842 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 18-118 |
| Cow position: | chr1:101946738-101946638 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-119 |
| Cow position: | chr1:48769779-48769879 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-119 |
| Cow position: | chr1:54157271-54157373 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 19-121 |
| Cow position: | chr1:49980687-49980788 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:38706876-38706779 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:54156756-54156660 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:65318553-65318650 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:67529033-67529130 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:95215212-95215115 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-117 |
| Cow position: | chr1:98576026-98576122 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 20-118 |
| Cow position: | chr1:75382959-75383053 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 20-118 |
| Cow position: | chr1:85550100-85550002 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:30504479-30504578 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:39068978-39068879 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:45288893-45288794 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:63530536-63530635 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:71916141-71916043 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:75141975-75142074 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-119 |
| Cow position: | chr1:90868463-90868364 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-120 |
| Cow position: | chr1:55428979-55428878 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 20-125 |
| Cow position: | chr1:4374359-4374254 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-117 |
| Cow position: | chr1:8287651-8287555 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-118 |
| Cow position: | chr1:56225764-56225861 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-119 |
| Cow position: | chr1:8670752-8670850 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-119 |
| Cow position: | chr1:42541577-42541675 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-119 |
| Cow position: | chr1:45670614-45670709 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 21-119 |
| Cow position: | chr1:101632358-101632260 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-120 |
| Cow position: | chr1:43312052-43311953 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-115 |
| Cow position: | chr1:96081460-96081553 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-117 |
| Cow position: | chr1:19515639-19515544 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-119 |
| Cow position: | chr1:20667762-20667665 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-119 |
| Cow position: | chr1:69264790-69264885 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 22-119 |
| Cow position: | chr1:77739702-77739799 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-119 |
| Cow position: | chr1:74081999-74081904 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-119 |
| Cow position: | chr1:242541-242634 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-119 |
| Cow position: | chr1:100474218-100474311 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-257 |
| Cow position: | chr1:69722010-69722154 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 118-279 |
| Cow position: | chr1:98413611-98413448 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 120-255 |
| Cow position: | chr1:228662-228800 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 124-257 |
| Cow position: | chr1:95062617-95062749 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.