Cow genome map

Conread name: Ova1-OVRM10018B04

Conread position: 1-114
Cow position: chr1:30519038-30519148 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 1-116
Cow position: chr1:33712414-33712529 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 102
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 20, 25

Conread position: 1-118
Cow position: chr1:55321793-55321677 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 355-682
Cow position: chr1:21087826-21088171 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 77

Conread position: 356-656
Cow position: chr1:9382138-9381816 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 0

Conread position: 358-679
Cow position: chr1:97226289-97225956 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 153

Conread position: 358-682
Cow position: chr1:11291690-11291352 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 104

Conread position: 358-682
Cow position: chr1:33851701-33852043 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 358-682
Cow position: chr1:69766878-69767212 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 183

Conread position: 358-682
Cow position: chr1:89425989-89426331 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 78

Conread position: 358-684
Cow position: chr1:29609247-29608925 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 174, 141

Conread position: 359-679
Cow position: chr1:98659463-98659153 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 56

Conread position: 368-682
Cow position: chr1:44044206-44044540 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 375-677
Cow position: chr1:31403053-31402738 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 153, 16

Conread position: 375-682
Cow position: chr1:43570970-43570657 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 132, 95

Conread position: 376-569
Cow position: chr1:31329953-31329759 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 57, 65

Conread position: 376-679
Cow position: chr1:57568371-57568690 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 64

Conread position: 376-679
Cow position: chr1:79456532-79456215 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 63

Conread position: 376-679
Cow position: chr1:82923738-82923432 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 69

Conread position: 380-684
Cow position: chr1:17941343-17941025 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 68

Conread position: 381-681
Cow position: chr1:72186434-72186122 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 58

Conread position: 382-642
Cow position: chr1:22905224-22905483 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 153, 56

Conread position: 382-679
Cow position: chr1:34692667-34692971 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 109, 33

Conread position: 382-679
Cow position: chr1:91892675-91892361 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 382-679
Cow position: chr1:99913864-99914178 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 383-503
Cow position: chr1:89770215-89770095 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 41

Conread position: 383-511
Cow position: chr1:72981715-72981843 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 383-511
Cow position: chr1:85780332-85780204 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 383-534
Cow position: chr1:24651727-24651878 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 56, 50

Conread position: 383-571
Cow position: chr1:85882440-85882628 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 383-577
Cow position: chr1:91899438-91899633 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 190, 0

Conread position: 383-612
Cow position: chr1:58178543-58178300 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 157, 77

Conread position: 383-627
Cow position: chr1:86698770-86698512 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-634
Cow position: chr1:58883620-58883354 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 236

Conread position: 383-637
Cow position: chr1:30519135-30519406 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 92, 66

Conread position: 383-678
Cow position: chr1:76545093-76544782 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:5502413-5502723 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 218

Conread position: 383-679
Cow position: chr1:8825497-8825804 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 383-679
Cow position: chr1:21999509-21999199 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:25179585-25179272 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 202

Conread position: 383-679
Cow position: chr1:28873522-28873835 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:31418070-31417762 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 50

Conread position: 383-679
Cow position: chr1:42736899-42737213 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:52358830-52358517 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:58336283-58336593 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:62244198-62243885 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:63605331-63605021 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:69921990-69921680 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:72081225-72081521 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 383-679
Cow position: chr1:73070608-73070300 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 232

Conread position: 383-679
Cow position: chr1:76752205-76751891 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chr1:82564945-82565258 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:88131219-88131531 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 383-679
Cow position: chr1:93854969-93855274 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 383-679
Cow position: chr1:94660120-94660430 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chr1:102434591-102434283 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chr1:17036117-17035801 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chr1:28711358-28711647 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 383-682
Cow position: chr1:40053797-40054112 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 10

Conread position: 383-682
Cow position: chr1:40574655-40574971 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chr1:40684255-40683942 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 77

Conread position: 383-682
Cow position: chr1:53198991-53199298 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 114, 237

Conread position: 383-682
Cow position: chr1:56163991-56164307 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chr1:56490292-56490609 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 383-682
Cow position: chr1:65386774-65387086 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 246

Conread position: 383-682
Cow position: chr1:67834699-67834381 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chr1:86547697-86547384 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 222

Conread position: 384-679
Cow position: chr1:30534575-30534263 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 385-676
Cow position: chr1:69403430-69403738 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 385-679
Cow position: chr1:6194683-6194989 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 385-679
Cow position: chr1:11860791-11860494 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 151, 77

Conread position: 385-682
Cow position: chr1:29034740-29035046 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 238

Conread position: 385-682
Cow position: chr1:59209707-59209392 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 385-682
Cow position: chr1:82912700-82912377 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 81, 76

Conread position: 385-682
Cow position: chr1:85792126-85792436 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 385-684
Cow position: chr1:15026805-15027121 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 81, 59

Conread position: 386-678
Cow position: chr1:17012294-17011984 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 386-679
Cow position: chr1:56143887-56143577 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 386-679
Cow position: chr1:82366629-82366939 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 149, 0

Conread position: 386-681
Cow position: chr1:67287273-67287579 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 255

Conread position: 387-679
Cow position: chr1:26518435-26518131 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 46

Conread position: 389-679
Cow position: chr1:48246285-48246587 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 397-628
Cow position: chr1:57366666-57366420 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 143, 193

Conread position: 399-679
Cow position: chr1:1460726-1460459 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 133

Conread position: 408-679
Cow position: chr1:24443855-24443567 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 17, 64

Conread position: 533-679
Cow position: chr1:81863895-81863749 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 557-679
Cow position: chr1:72038922-72038804 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.