Cow genome map
| Conread name: | Ova1-OVRM10018B04 |
| Conread position: | 1-105 |
| Cow position: | chr11:8267529-8267425 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-114 |
| Cow position: | chr11:28063852-28063964 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 369-682 |
| Cow position: | chr11:52419486-52419809 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 167, 254 |
| Conread position: | 382-682 |
| Cow position: | chr11:9734560-9734254 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 93, 159 |
| Conread position: | 383-523 |
| Cow position: | chr11:20510233-20510371 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 383-534 |
| Cow position: | chr11:8245418-8245569 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 383-571 |
| Cow position: | chr11:4270751-4270564 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 383-606 |
| Cow position: | chr11:28108253-28108493 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-624 |
| Cow position: | chr11:23877413-23877671 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-634 |
| Cow position: | chr11:5343114-5342846 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr11:10847552-10847866 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 383-679 |
| Cow position: | chr11:11988217-11988527 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr11:12358314-12358001 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr11:19102376-19102080 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr11:26124818-26124511 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 383-679 |
| Cow position: | chr11:28054506-28054193 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr11:43514526-43514217 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 383-679 |
| Cow position: | chr11:53431956-53431643 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 383-679 |
| Cow position: | chr11:58134497-58134809 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr11:67846468-67846153 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr11:71329698-71330008 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-681 |
| Cow position: | chr11:45111726-45112033 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 215 |
| Conread position: | 383-681 |
| Cow position: | chr11:53287062-53286748 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 304 |
| Conread position: | 383-681 |
| Cow position: | chr11:61400948-61400643 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 115 |
| Conread position: | 383-682 |
| Cow position: | chr11:15983728-15984044 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:17107583-17107268 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 383-682 |
| Cow position: | chr11:19064146-19063831 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 112 |
| Conread position: | 383-682 |
| Cow position: | chr11:28229654-28229337 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 117 |
| Conread position: | 383-682 |
| Cow position: | chr11:36744078-36743762 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:57627944-57627619 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:63655234-63654918 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:64046101-64046417 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:64081980-64081664 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:67450601-67450911 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 219 |
| Conread position: | 383-682 |
| Cow position: | chr11:73477411-73477727 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 383-682 |
| Cow position: | chr11:85393701-85393386 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 383-683 |
| Cow position: | chr11:84389737-84390056 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 97 |
| Conread position: | 383-684 |
| Cow position: | chr11:10090786-10091099 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 62 |
| Conread position: | 383-684 |
| Cow position: | chr11:66727483-66727794 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 384-679 |
| Cow position: | chr11:38835320-38835019 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 219 |
| Conread position: | 385-659 |
| Cow position: | chr11:30206036-30206308 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 155, 85 |
| Conread position: | 385-671 |
| Cow position: | chr11:42432255-42432556 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 86 |
| Conread position: | 385-678 |
| Cow position: | chr11:44251904-44252214 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 385-679 |
| Cow position: | chr11:44157141-44156832 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 386-665 |
| Cow position: | chr11:67153753-67154045 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 232 |
| Conread position: | 386-677 |
| Cow position: | chr11:62229300-62229601 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 92 |
| Conread position: | 389-679 |
| Cow position: | chr11:76374097-76373800 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 390-679 |
| Cow position: | chr11:4027448-4027144 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 8 |
| Conread position: | 398-679 |
| Cow position: | chr11:44492152-44491859 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 72 |
| Conread position: | 541-681 |
| Cow position: | chr11:12093845-12093983 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 542-682 |
| Cow position: | chr11:47760002-47759859 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.