Cow genome map
| Conread name: | Ova1-OVRM10018B04 |
| Conread position: | 1-113 |
| Cow position: | chr3:52863909-52863798 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 1-114 |
| Cow position: | chr3:3981974-3982087 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-117 |
| Cow position: | chr3:34030670-34030556 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-677 |
| Cow position: | chr3:4285888-4286429 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 0 |
| Conread position: | 356-679 |
| Cow position: | chr3:53515904-53516244 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 332 |
| Conread position: | 357-534 |
| Cow position: | chr3:54341959-54341787 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 358-678 |
| Cow position: | chr3:64650920-64651258 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 358-679 |
| Cow position: | chr3:45033034-45033378 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 358-679 |
| Cow position: | chr3:66620473-66620814 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 358-681 |
| Cow position: | chr3:68699678-68699332 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 335 |
| Conread position: | 358-682 |
| Cow position: | chr3:6782678-6783006 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 358-683 |
| Cow position: | chr3:14439467-14439129 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 283 |
| Conread position: | 369-681 |
| Cow position: | chr3:9402786-9402477 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 116, 199 |
| Conread position: | 376-534 |
| Cow position: | chr3:77424124-77424284 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 376-537 |
| Cow position: | chr3:60208292-60208132 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 378-679 |
| Cow position: | chr3:24643507-24643815 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 379-534 |
| Cow position: | chr3:19721843-19721688 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-663 |
| Cow position: | chr3:46502858-46503155 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 383-553 |
| Cow position: | chr3:36881594-36881424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 383-571 |
| Cow position: | chr3:594903-595091 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 383-600 |
| Cow position: | chr3:48842491-48842721 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 383-620 |
| Cow position: | chr3:29330951-29330697 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 383-627 |
| Cow position: | chr3:1516475-1516736 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-644 |
| Cow position: | chr3:23213751-23213473 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-654 |
| Cow position: | chr3:18542081-18541797 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 383-663 |
| Cow position: | chr3:21182361-21182074 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 51 |
| Conread position: | 383-676 |
| Cow position: | chr3:77443681-77443977 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 138, 61 |
| Conread position: | 383-679 |
| Cow position: | chr3:5953860-5953548 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 383-679 |
| Cow position: | chr3:5995375-5995062 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 55 |
| Conread position: | 383-679 |
| Cow position: | chr3:10239980-10240291 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 229 |
| Conread position: | 383-679 |
| Cow position: | chr3:18811826-18812139 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 291 |
| Conread position: | 383-679 |
| Cow position: | chr3:23290014-23289703 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 55 |
| Conread position: | 383-679 |
| Cow position: | chr3:29578953-29579256 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 225 |
| Conread position: | 383-679 |
| Cow position: | chr3:30314879-30315194 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr3:34030572-34030262 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr3:40339792-40339482 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 383-679 |
| Cow position: | chr3:40823713-40824022 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr3:49678118-49678433 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 383-679 |
| Cow position: | chr3:50915652-50915964 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 383-681 |
| Cow position: | chr3:2917780-2918094 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 303 |
| Conread position: | 383-681 |
| Cow position: | chr3:36117982-36118295 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 77 |
| Conread position: | 383-682 |
| Cow position: | chr3:7158396-7158091 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 383-682 |
| Cow position: | chr3:18859733-18860046 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 383-682 |
| Cow position: | chr3:19736900-19737216 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 383-682 |
| Cow position: | chr3:19878977-19879288 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 222 |
| Conread position: | 383-682 |
| Cow position: | chr3:20380863-20381176 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 383-682 |
| Cow position: | chr3:22336208-22336524 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr3:24314787-24315102 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 383-682 |
| Cow position: | chr3:32622717-32622409 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 383-682 |
| Cow position: | chr3:41211415-41211100 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 276 |
| Conread position: | 383-682 |
| Cow position: | chr3:46679751-46680063 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 383-682 |
| Cow position: | chr3:51242692-51243006 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr3:66890643-66890330 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 222 |
| Conread position: | 383-684 |
| Cow position: | chr3:59861692-59862009 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 311 |
| Conread position: | 384-575 |
| Cow position: | chr3:3055001-3055198 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 384-679 |
| Cow position: | chr3:18463246-18462937 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 385-510 |
| Cow position: | chr3:74439625-74439750 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-534 |
| Cow position: | chr3:4028070-4028214 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 385-679 |
| Cow position: | chr3:19756629-19756318 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 385-682 |
| Cow position: | chr3:46860981-46860668 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 220 |
| Conread position: | 385-682 |
| Cow position: | chr3:47081089-47080778 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 264 |
| Conread position: | 385-682 |
| Cow position: | chr3:64027764-64027450 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 385-682 |
| Cow position: | chr3:68873432-68873120 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 287 |
| Conread position: | 385-684 |
| Cow position: | chr3:2907440-2907135 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 386-679 |
| Cow position: | chr3:42432561-42432852 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 137 |
| Conread position: | 386-679 |
| Cow position: | chr3:75040840-75040530 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 386-682 |
| Cow position: | chr3:72630397-72630709 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 387-682 |
| Cow position: | chr3:3523345-3523655 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 61 |
| Conread position: | 398-679 |
| Cow position: | chr3:50127316-50127002 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 531-679 |
| Cow position: | chr3:42447590-42447738 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.