Cow genome map
| Conread name: | Ova1-OVRM10018B04 |
| Conread position: | 1-117 |
| Cow position: | chr6:8021193-8021309 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-619 |
| Cow position: | chr6:3277612-3277342 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 356-622 |
| Cow position: | chr6:68027121-68027407 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 356-682 |
| Cow position: | chr6:40251994-40252337 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 358-533 |
| Cow position: | chr6:65881247-65881423 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 358-652 |
| Cow position: | chr6:52693365-52693675 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 363-571 |
| Cow position: | chr6:10500641-10500848 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 365-679 |
| Cow position: | chr6:66541989-66542316 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 368-682 |
| Cow position: | chr6:17597944-17597615 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 318 |
| Conread position: | 373-671 |
| Cow position: | chr6:538354-538656 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 375-594 |
| Cow position: | chr6:14852224-14851988 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 376-679 |
| Cow position: | chr6:30479464-30479779 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 296 |
| Conread position: | 376-679 |
| Cow position: | chr6:35876355-35876039 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 376-679 |
| Cow position: | chr6:47042838-47042524 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 203 |
| Conread position: | 379-672 |
| Cow position: | chr6:28275345-28275650 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 383-553 |
| Cow position: | chr6:55543958-55543790 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-563 |
| Cow position: | chr6:8202104-8202282 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 383-619 |
| Cow position: | chr6:15280188-15279942 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 383-623 |
| Cow position: | chr6:64715597-64715848 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 153, 237 |
| Conread position: | 383-631 |
| Cow position: | chr6:39437914-39438172 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-634 |
| Cow position: | chr6:1411582-1411314 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 383-669 |
| Cow position: | chr6:51086307-51086609 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-678 |
| Cow position: | chr6:5949413-5949101 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr6:3889117-3888807 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr6:7178913-7178596 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 226 |
| Conread position: | 383-679 |
| Cow position: | chr6:10643914-10644213 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 383-679 |
| Cow position: | chr6:15140816-15140508 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 383-679 |
| Cow position: | chr6:17046421-17046732 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 299 |
| Conread position: | 383-679 |
| Cow position: | chr6:20560745-20560433 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 270 |
| Conread position: | 383-679 |
| Cow position: | chr6:24239422-24239731 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 100 |
| Conread position: | 383-679 |
| Cow position: | chr6:27470966-27471276 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr6:27529640-27529331 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 230 |
| Conread position: | 383-679 |
| Cow position: | chr6:34892638-34892326 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 383-679 |
| Cow position: | chr6:44150195-44149882 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-679 |
| Cow position: | chr6:65841953-65842256 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 80 |
| Conread position: | 383-679 |
| Cow position: | chr6:65928331-65928642 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 153, 226 |
| Conread position: | 383-682 |
| Cow position: | chr6:186108-185792 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr6:331105-330789 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr6:2375062-2375375 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 383-682 |
| Cow position: | chr6:7141102-7140785 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 383-682 |
| Cow position: | chr6:16052240-16052557 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 383-682 |
| Cow position: | chr6:24323020-24322704 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 383-682 |
| Cow position: | chr6:26670506-26670189 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 143 |
| Conread position: | 383-682 |
| Cow position: | chr6:39908888-39909204 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 383-682 |
| Cow position: | chr6:40275449-40275764 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 383-682 |
| Cow position: | chr6:43618076-43618392 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 383-682 |
| Cow position: | chr6:69221849-69221533 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 384-636 |
| Cow position: | chr6:36526417-36526683 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 385-632 |
| Cow position: | chr6:40867192-40866933 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 385-635 |
| Cow position: | chr6:30274809-30274547 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 385-669 |
| Cow position: | chr6:43793347-43793045 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 385-679 |
| Cow position: | chr6:1822264-1821953 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 385-679 |
| Cow position: | chr6:6566976-6567262 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 149, 40 |
| Conread position: | 385-680 |
| Cow position: | chr6:38233203-38233508 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 29 |
| Conread position: | 385-682 |
| Cow position: | chr6:13847389-13847703 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 386-617 |
| Cow position: | chr6:11274550-11274308 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 75 |
| Conread position: | 386-672 |
| Cow position: | chr6:65914564-65914865 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 150, 61 |
| Conread position: | 386-682 |
| Cow position: | chr6:29311862-29312175 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 387-614 |
| Cow position: | chr6:40813301-40813057 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 387-684 |
| Cow position: | chr6:40315754-40316063 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 217 |
| Conread position: | 388-675 |
| Cow position: | chr6:34005013-34004728 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 148, 54 |
| Conread position: | 389-682 |
| Cow position: | chr6:12665952-12665643 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 391-610 |
| Cow position: | chr6:58027123-58027358 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 142, 226 |
| Conread position: | 398-534 |
| Cow position: | chr6:26044926-26045063 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 412-679 |
| Cow position: | chr6:40973673-40973952 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 529-679 |
| Cow position: | chr6:65881736-65881886 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-679 |
| Cow position: | chr6:41804396-41804542 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.