Cow genome map

Conread name: Ova1-OVRM10018B04

Conread position: 1-90
Cow position: chrX:24275774-24275863 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-114
Cow position: chrX:44387224-44387337 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-115
Cow position: chrX:13053128-13053237 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 2-115
Cow position: chrX:29794015-29793907 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 2-117
Cow position: chrX:40246777-40246662 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 356-678
Cow position: chrX:13412964-13412624 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 357-538
Cow position: chrX:1942574-1942394 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 75

Conread position: 357-682
Cow position: chrX:31493589-31493930 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 232

Conread position: 358-518
Cow position: chrX:28758471-28758310 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 358-532
Cow position: chrX:12803694-12803520 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 151

Conread position: 358-534
Cow position: chrX:22130067-22129891 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 121

Conread position: 358-534
Cow position: chrX:22619138-22618961 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 74

Conread position: 358-592
Cow position: chrX:2102029-2102280 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 66

Conread position: 358-638
Cow position: chrX:24089571-24089870 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 92

Conread position: 358-645
Cow position: chrX:5394830-5394526 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 19, 74

Conread position: 358-657
Cow position: chrX:7093768-7094085 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 358-679
Cow position: chrX:9008508-9008844 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 248

Conread position: 358-679
Cow position: chrX:29285615-29285949 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 77

Conread position: 358-682
Cow position: chrX:6872903-6872561 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 358-682
Cow position: chrX:37849185-37849525 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 142

Conread position: 358-682
Cow position: chrX:39563761-39563422 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 279

Conread position: 369-578
Cow position: chrX:30178804-30178579 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 148, 31

Conread position: 375-679
Cow position: chrX:30183699-30183409 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 64

Conread position: 376-679
Cow position: chrX:31198636-31198959 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 380-511
Cow position: chrX:5299024-5298893 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 102, 98

Conread position: 380-679
Cow position: chrX:26528175-26528487 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 380-679
Cow position: chrX:29853369-29853056 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 90

Conread position: 382-626
Cow position: chrX:3407618-3407361 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 152, 205

Conread position: 382-679
Cow position: chrX:2482434-2482121 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 383-515
Cow position: chrX:8454948-8455081 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 383-523
Cow position: chrX:5833235-5833095 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 383-534
Cow position: chrX:16237979-16238130 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 383-537
Cow position: chrX:30056856-30057010 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 50

Conread position: 383-571
Cow position: chrX:30366972-30366789 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 383-583
Cow position: chrX:13397924-13397707 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 48

Conread position: 383-617
Cow position: chrX:18219593-18219845 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 153, 0

Conread position: 383-619
Cow position: chrX:23391396-23391144 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 153, 0

Conread position: 383-621
Cow position: chrX:14594967-14595222 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 153, 0

Conread position: 383-630
Cow position: chrX:29950388-29950121 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 0

Conread position: 383-654
Cow position: chrX:2536251-2535965 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 92, 226

Conread position: 383-672
Cow position: chrX:27426124-27425818 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-675
Cow position: chrX:27495120-27495425 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 383-678
Cow position: chrX:5336290-5335978 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 48

Conread position: 383-679
Cow position: chrX:320666-320979 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 383-679
Cow position: chrX:970971-971284 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 383-679
Cow position: chrX:1547177-1547488 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 289

Conread position: 383-679
Cow position: chrX:16699503-16699816 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chrX:18659586-18659279 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 232

Conread position: 383-679
Cow position: chrX:20720186-20720499 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-679
Cow position: chrX:21490393-21490694 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 184

Conread position: 383-679
Cow position: chrX:21829727-21830040 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 56

Conread position: 383-679
Cow position: chrX:23277222-23277537 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 101

Conread position: 383-679
Cow position: chrX:26758404-26758102 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 247

Conread position: 383-679
Cow position: chrX:26766996-26766698 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 217

Conread position: 383-679
Cow position: chrX:28651347-28651039 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 114

Conread position: 383-679
Cow position: chrX:29096404-29096714 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 276

Conread position: 383-679
Cow position: chrX:29885189-29885501 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 228

Conread position: 383-679
Cow position: chrX:41850997-41850686 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 223

Conread position: 383-681
Cow position: chrX:12280074-12279762 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 383-681
Cow position: chrX:16362928-16362614 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 304

Conread position: 383-681
Cow position: chrX:30711786-30712100 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 209

Conread position: 383-682
Cow position: chrX:1834014-1834330 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:2604244-2604559 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 48

Conread position: 383-682
Cow position: chrX:5863594-5863906 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 87

Conread position: 383-682
Cow position: chrX:7481828-7482144 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 48

Conread position: 383-682
Cow position: chrX:8479846-8480162 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:8588374-8588690 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:10531362-10531046 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 383-682
Cow position: chrX:12288198-12287891 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 383-682
Cow position: chrX:12353436-12353752 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 383-682
Cow position: chrX:12654564-12654250 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 52

Conread position: 383-682
Cow position: chrX:15980754-15980445 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 216

Conread position: 383-682
Cow position: chrX:20315866-20315550 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:22611143-22611455 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 47

Conread position: 383-682
Cow position: chrX:26399981-26399669 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 383-682
Cow position: chrX:28585176-28585491 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 52

Conread position: 383-682
Cow position: chrX:29911229-29910913 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:30011235-30011551 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:35530058-35530374 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-682
Cow position: chrX:37812357-37812674 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 383-684
Cow position: chrX:23019526-23019842 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 303

Conread position: 384-679
Cow position: chrX:17667695-17667373 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 141, 0

Conread position: 384-679
Cow position: chrX:21589171-21589477 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 263

Conread position: 384-679
Cow position: chrX:23040923-23040613 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 62

Conread position: 385-503
Cow position: chrX:22814594-22814712 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 385-652
Cow position: chrX:19874033-19874299 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 144, 39

Conread position: 385-679
Cow position: chrX:15127038-15126727 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 385-679
Cow position: chrX:30231897-30231589 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 385-680
Cow position: chrX:29793919-29793612 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 386-679
Cow position: chrX:21223127-21223435 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 386-679
Cow position: chrX:28553847-28554125 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 121, 0

Conread position: 389-682
Cow position: chrX:32066960-32066653 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 216

Conread position: 391-671
Cow position: chrX:21269832-21269555 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 45

Conread position: 412-682
Cow position: chrX:16275875-16276161 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 413-679
Cow position: chrX:27960781-27961067 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 20

Conread position: 520-679
Cow position: chrX:22816199-22816358 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.