Cow genome map
| Conread name: | Ova1-OVRM10024C02 |
| Conread position: | 1-98 |
| Cow position: | chr3:50099316-50099219 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-100 |
| Cow position: | chr3:57764045-57763947 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-105 |
| Cow position: | chr3:15661878-15661982 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-106 |
| Cow position: | chr3:30179905-30179800 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-106 |
| Cow position: | chr3:79292656-79292552 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-108 |
| Cow position: | chr3:37041249-37041145 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-110 |
| Cow position: | chr3:25691571-25691463 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-112 |
| Cow position: | chr3:22872230-22872340 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:15954255-15954367 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:18887403-18887289 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 79 |
| Conread position: | 1-114 |
| Cow position: | chr3:42671142-42671031 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:53112991-53112878 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:72675909-72675797 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:79592067-79592179 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr3:80081996-80082107 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-115 |
| Cow position: | chr3:26920718-26920606 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-116 |
| Cow position: | chr3:29813065-29812952 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-124 |
| Cow position: | chr3:30701146-30701022 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 1-127 |
| Cow position: | chr3:56548-56672 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 1-127 |
| Cow position: | chr3:9641387-9641261 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 1-127 |
| Cow position: | chr3:19006489-19006364 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chr3:23944917-23944794 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-127 |
| Cow position: | chr3:39970050-39970175 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chr3:55815166-55815041 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chr3:58540711-58540833 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-127 |
| Cow position: | chr3:71104663-71104540 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:15158863-15158718 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-205 |
| Cow position: | chr3:23471646-23471844 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-214 |
| Cow position: | chr3:54740050-54740272 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 82 |
| Conread position: | 1-247 |
| Cow position: | chr3:51609638-51609389 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 153, 76 |
| Conread position: | 1-249 |
| Cow position: | chr3:63203268-63203015 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 1-250 |
| Cow position: | chr3:16886059-16886296 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 226, 73 |
| Conread position: | 1-250 |
| Cow position: | chr3:31119784-31120042 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 83 |
| Conread position: | 1-250 |
| Cow position: | chr3:72018732-72018467 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 82 |
| Conread position: | 1-264 |
| Cow position: | chr3:38691584-38691843 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 1-267 |
| Cow position: | chr3:54050198-54050469 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 165, 26 |
| Conread position: | 2-115 |
| Cow position: | chr3:13329952-13330063 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 2-117 |
| Cow position: | chr3:70895867-70895753 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 2-118 |
| Cow position: | chr3:15228998-15229113 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 2-127 |
| Cow position: | chr3:19822145-19822271 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 2-127 |
| Cow position: | chr3:65413456-65413578 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-114 |
| Cow position: | chr3:20129762-20129651 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-114 |
| Cow position: | chr3:31309535-31309644 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-114 |
| Cow position: | chr3:53572930-53573040 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-120 |
| Cow position: | chr3:27544509-27544625 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-250 |
| Cow position: | chr3:3283674-3283914 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 230, 64 |
| Conread position: | 3-250 |
| Cow position: | chr3:22221168-22220918 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 3-250 |
| Cow position: | chr3:59333587-59333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 4-118 |
| Cow position: | chr3:83815974-83816087 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-125 |
| Cow position: | chr3:77271448-77271569 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-250 |
| Cow position: | chr3:45744532-45744289 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 218, 80 |
| Conread position: | 6-114 |
| Cow position: | chr3:17695188-17695296 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-115 |
| Cow position: | chr3:14552695-14552587 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 6-122 |
| Cow position: | chr3:67744810-67744926 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 6-126 |
| Cow position: | chr3:80581488-80581369 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 6-127 |
| Cow position: | chr3:5097021-5096900 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-127 |
| Cow position: | chr3:78946020-78946142 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 6-250 |
| Cow position: | chr3:17895668-17895432 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 158, 25 |
| Conread position: | 7-248 |
| Cow position: | chr3:4031784-4031536 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 122, 71 |
| Conread position: | 19-221 |
| Cow position: | chr3:78894510-78894709 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 162, 56 |
| Conread position: | 74-250 |
| Cow position: | chr3:74878854-74879040 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 157 |
Show alignments to all cow chromosomes.