Cow genome map
| Conread name: | Ova1-OVRM10024C02 |
| Conread position: | 1-100 |
| Cow position: | chr4:25806736-25806639 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-100 |
| Cow position: | chr4:53763280-53763379 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-102 |
| Cow position: | chr4:52177302-52177402 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-106 |
| Cow position: | chr4:54468457-54468562 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-106 |
| Cow position: | chr4:54667853-54667957 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-107 |
| Cow position: | chr4:23847213-23847318 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-108 |
| Cow position: | chr4:22072835-22072941 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-108 |
| Cow position: | chr4:37935443-37935549 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-110 |
| Cow position: | chr4:4321168-4321276 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-112 |
| Cow position: | chr4:39128369-39128257 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 1-113 |
| Cow position: | chr4:62471906-62471795 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr4:11872074-11872186 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr4:41441403-41441291 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr4:42673009-42672897 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chr4:51903440-51903328 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-116 |
| Cow position: | chr4:20139682-20139795 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-118 |
| Cow position: | chr4:23526535-23526419 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-122 |
| Cow position: | chr4:28772229-28772349 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-122 |
| Cow position: | chr4:51784019-51783898 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-126 |
| Cow position: | chr4:27529951-27529827 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chr4:4300377-4300252 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-127 |
| Cow position: | chr4:5924685-5924810 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-127 |
| Cow position: | chr4:22259582-22259705 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 59 |
| Conread position: | 1-127 |
| Cow position: | chr4:63349636-63349763 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 1-138 |
| Cow position: | chr4:58687599-58687735 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-204 |
| Cow position: | chr4:46591498-46591302 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 1-216 |
| Cow position: | chr4:34630737-34630533 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-225 |
| Cow position: | chr4:44612840-44612608 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 82 |
| Conread position: | 1-248 |
| Cow position: | chr4:24686047-24686300 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 92, 76 |
| Conread position: | 1-249 |
| Cow position: | chr4:3251698-3251967 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 83 |
| Conread position: | 1-249 |
| Cow position: | chr4:20299108-20298869 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 219, 103 |
| Conread position: | 1-249 |
| Cow position: | chr4:51122894-51122637 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 1-250 |
| Cow position: | chr4:36755588-36755357 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 1-250 |
| Cow position: | chr4:44072932-44073178 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 83 |
| Conread position: | 1-250 |
| Cow position: | chr4:46083055-46083313 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 1-251 |
| Cow position: | chr4:58948073-58948319 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 1-264 |
| Cow position: | chr4:61624757-61625007 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 226, 36 |
| Conread position: | 1-315 |
| Cow position: | chr4:9912566-9912242 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 2-113 |
| Cow position: | chr4:38999263-38999154 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 2-127 |
| Cow position: | chr4:46456213-46456334 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 3-147 |
| Cow position: | chr4:48172946-48172806 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-250 |
| Cow position: | chr4:15462438-15462673 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 224, 51 |
| Conread position: | 3-250 |
| Cow position: | chr4:27287270-27287512 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 224, 81 |
| Conread position: | 4-127 |
| Cow position: | chr4:55523208-55523087 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 6-114 |
| Cow position: | chr4:2893857-2893750 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 6-127 |
| Cow position: | chr4:19438291-19438171 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 6-127 |
| Cow position: | chr4:59105978-59106098 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 6-147 |
| Cow position: | chr4:19542629-19542487 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 8-248 |
| Cow position: | chr4:11389710-11389943 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 218, 59 |
| Conread position: | 14-250 |
| Cow position: | chr4:51739878-51740106 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 212, 70 |
| Conread position: | 14-250 |
| Cow position: | chr4:67408361-67408127 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 161, 25 |
| Conread position: | 103-250 |
| Cow position: | chr4:59106108-59106256 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
Show alignments to all cow chromosomes.