Cow genome map
| Conread name: | Ova1-OVRM10024C02 |
| Conread position: | 1-100 |
| Cow position: | chrX:35542763-35542665 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-100 |
| Cow position: | chrX:42381228-42381326 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-102 |
| Cow position: | chrX:21665722-21665821 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-105 |
| Cow position: | chrX:42855280-42855177 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-106 |
| Cow position: | chrX:41743784-41743681 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-106 |
| Cow position: | chrX:42339064-42339168 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-112 |
| Cow position: | chrX:40647849-40647740 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-113 |
| Cow position: | chrX:48675949-48675838 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chrX:7718726-7718613 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-114 |
| Cow position: | chrX:26440908-26441020 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chrX:27446560-27446448 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-114 |
| Cow position: | chrX:43527375-43527263 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-118 |
| Cow position: | chrX:12249675-12249561 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-122 |
| Cow position: | chrX:619136-619256 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-122 |
| Cow position: | chrX:27394142-27394262 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-122 |
| Cow position: | chrX:31745174-31745295 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 1-122 |
| Cow position: | chrX:33855361-33855481 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-123 |
| Cow position: | chrX:32623454-32623334 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-124 |
| Cow position: | chrX:26625805-26625927 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-126 |
| Cow position: | chrX:4043979-4044102 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-126 |
| Cow position: | chrX:47248913-47249040 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:2029261-2029137 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:6639997-6639871 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:9855172-9855047 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:21672423-21672298 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:23514143-23514271 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 1-127 |
| Cow position: | chrX:34543658-34543534 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:36975821-36975695 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 1-127 |
| Cow position: | chrX:39558475-39558602 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:41884546-41884671 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:42492643-42492763 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-127 |
| Cow position: | chrX:47243406-47243532 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 1-128 |
| Cow position: | chrX:37906836-37906709 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 75, 89 |
| Conread position: | 1-128 |
| Cow position: | chrX:41403844-41403721 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-128 |
| Cow position: | chrX:41410392-41410269 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-146 |
| Cow position: | chrX:22624352-22624209 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-147 |
| Cow position: | chrX:48578287-48578142 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-228 |
| Cow position: | chrX:46984625-46984843 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 131 |
| Conread position: | 1-249 |
| Cow position: | chrX:16416378-16416136 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 226, 65 |
| Conread position: | 1-250 |
| Cow position: | chrX:6203427-6203178 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 166, 83 |
| Conread position: | 1-250 |
| Cow position: | chrX:20168078-20167822 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 1-250 |
| Cow position: | chrX:33493646-33493400 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 163, 77 |
| Conread position: | 1-250 |
| Cow position: | chrX:33519489-33519247 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 77 |
| Conread position: | 1-250 |
| Cow position: | chrX:38549320-38549080 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 205, 83 |
| Conread position: | 1-250 |
| Cow position: | chrX:44961619-44961381 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 226, 83 |
| Conread position: | 1-250 |
| Cow position: | chrX:46044916-46044687 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 226, 83 |
| Conread position: | 1-294 |
| Cow position: | chrX:2206672-2206956 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 221, 77 |
| Conread position: | 2-127 |
| Cow position: | chrX:1514530-1514657 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 2-250 |
| Cow position: | chrX:7425336-7425098 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 2-273 |
| Cow position: | chrX:23970261-23970004 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 3-114 |
| Cow position: | chrX:32020252-32020362 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-114 |
| Cow position: | chrX:33020355-33020246 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-114 |
| Cow position: | chrX:39555946-39556057 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 4-106 |
| Cow position: | chrX:31949062-31949163 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-127 |
| Cow position: | chrX:6277564-6277685 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-242 |
| Cow position: | chrX:40789073-40788836 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 4-250 |
| Cow position: | chrX:42499160-42499400 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 203, 74 |
| Conread position: | 5-117 |
| Cow position: | chrX:22812928-22812819 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 5-127 |
| Cow position: | chrX:38935149-38935028 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 6-248 |
| Cow position: | chrX:27680268-27680032 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 221, 69 |
| Conread position: | 8-114 |
| Cow position: | chrX:17497961-17497856 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 12-114 |
| Cow position: | chrX:32870926-32871026 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 14-116 |
| Cow position: | chrX:35413491-35413390 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 33-250 |
| Cow position: | chrX:6262542-6262763 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 51-250 |
| Cow position: | chrX:45098641-45098443 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 172, 114 |
| Conread position: | 72-250 |
| Cow position: | chrX:10394486-10394311 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 169-287 |
| Cow position: | chrX:10412236-10412356 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.