Cow genome map

Conread name: Ova1-OVRM10035D03

Conread position: 11-448
Cow position: chr27:18558711-18558294 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 51

Conread position: 62-448
Cow position: chr27:12597096-12596707 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 154

Conread position: 81-447
Cow position: chr27:26379881-26380234 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 47

Conread position: 131-398
Cow position: chr27:22498809-22498544 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 73, 94

Conread position: 133-402
Cow position: chr27:13198170-13197903 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 43, 31

Conread position: 140-448
Cow position: chr27:19661188-19660869 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 59, 25

Conread position: 146-444
Cow position: chr27:13875971-13875669 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 12

Conread position: 146-448
Cow position: chr27:6523287-6522981 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 146

Conread position: 148-443
Cow position: chr27:25791044-25790746 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 122

Conread position: 149-442
Cow position: chr27:18593504-18593212 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 14

Conread position: 158-446
Cow position: chr27:2592770-2592482 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 101

Conread position: 160-415
Cow position: chr27:23128681-23128423 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 19

Conread position: 160-444
Cow position: chr27:23632828-23632537 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 6, 58

Conread position: 160-446
Cow position: chr27:8942456-8942745 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 138

Conread position: 162-399
Cow position: chr27:23454920-23455169 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 6, 34

Conread position: 162-446
Cow position: chr27:26161721-26161439 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 34, 25

Conread position: 165-386
Cow position: chr27:26625349-26625130 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 126

Conread position: 165-436
Cow position: chr27:9090579-9090850 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 36, 137

Conread position: 165-448
Cow position: chr27:6541847-6541569 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 105

Conread position: 165-448
Cow position: chr27:28518507-28518233 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 95

Conread position: 166-400
Cow position: chr27:7958614-7958857 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 35, 97

Conread position: 166-429
Cow position: chr27:6550672-6550414 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 117

Conread position: 166-437
Cow position: chr27:28189996-28190267 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 32, 120

Conread position: 166-440
Cow position: chr27:26398038-26398313 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 126

Conread position: 166-442
Cow position: chr27:1183655-1183941 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 73

Conread position: 166-447
Cow position: chr27:1636723-1636997 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 83, 35

Conread position: 166-448
Cow position: chr27:536678-536400 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 35, 54

Conread position: 166-448
Cow position: chr27:8962048-8962320 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 84

Conread position: 166-448
Cow position: chr27:10980085-10979800 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 159

Conread position: 166-448
Cow position: chr27:23554102-23554392 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 35, 21

Conread position: 166-448
Cow position: chr27:28921675-28921955 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 160

Conread position: 166-448
Cow position: chr27:29831467-29831760 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 120, 43

Conread position: 167-346
Cow position: chr27:18922670-18922491 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 124

Conread position: 167-446
Cow position: chr27:27038624-27038902 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 134, 102

Conread position: 167-446
Cow position: chr27:30868520-30868801 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 38

Conread position: 167-447
Cow position: chr27:30362463-30362184 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 62

Conread position: 168-448
Cow position: chr27:14902430-14902716 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 155

Conread position: 171-448
Cow position: chr27:27064224-27064502 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 110, 97

Conread position: 172-431
Cow position: chr27:24227578-24227841 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 89

Conread position: 172-439
Cow position: chr27:4385850-4386117 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 29, 90

Conread position: 172-439
Cow position: chr27:31147458-31147725 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 26, 91

Conread position: 172-445
Cow position: chr27:25380206-25379930 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 96

Conread position: 172-447
Cow position: chr27:27843777-27844060 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 152

Conread position: 173-348
Cow position: chr27:2643722-2643887 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 128, 27

Conread position: 174-448
Cow position: chr27:22171511-22171234 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 22, 35

Conread position: 176-413
Cow position: chr27:17926426-17926651 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 125, 84

Conread position: 176-435
Cow position: chr27:26427917-26428184 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 149

Conread position: 176-447
Cow position: chr27:24999523-24999802 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 25, 129

Conread position: 178-376
Cow position: chr27:29309235-29309033 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 117

Conread position: 178-446
Cow position: chr27:22454570-22454836 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 85

Conread position: 181-416
Cow position: chr27:18215262-18215021 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 182-448
Cow position: chr27:20354785-20354527 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 19, 89

Conread position: 188-448
Cow position: chr27:21569644-21569903 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 73

Conread position: 189-446
Cow position: chr27:30915200-30914948 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 7, 72

Conread position: 190-406
Cow position: chr27:30843881-30844094 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 81

Conread position: 193-448
Cow position: chr27:20036935-20037179 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 78

Conread position: 195-448
Cow position: chr27:16705438-16705188 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 91, 63

Conread position: 196-401
Cow position: chr27:18434281-18434487 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 58, 24

Conread position: 196-448
Cow position: chr27:30988989-30988734 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 98

Conread position: 198-445
Cow position: chr27:31499256-31499010 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 103, 62

Conread position: 207-447
Cow position: chr27:4067-3835 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 97

Conread position: 216-444
Cow position: chr27:9169474-9169705 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 44

Conread position: 218-445
Cow position: chr27:22268673-22268441 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 44, 105

Conread position: 219-448
Cow position: chr27:15643343-15643110 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 105

Conread position: 227-431
Cow position: chr27:7346820-7346619 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 53, 33

Conread position: 228-442
Cow position: chr27:30871901-30872116 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 73, 40

Conread position: 239-448
Cow position: chr27:3306921-3306711 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 65

Conread position: 255-448
Cow position: chr27:24371366-24371177 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 29

Conread position: 255-448
Cow position: chr27:29380990-29380790 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 19, 28

Conread position: 262-448
Cow position: chr27:4858521-4858702 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 9

Conread position: 262-448
Cow position: chr27:26226165-26226353 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 153

Conread position: 265-448
Cow position: chr27:7537948-7538140 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 23, 179

Conread position: 279-448
Cow position: chr27:20901670-20901508 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 78

Conread position: 284-446
Cow position: chr27:20497317-20497147 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 157

Conread position: 287-446
Cow position: chr27:10395158-10395320 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 25

Conread position: 287-448
Cow position: chr27:715603-715438 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 34

Conread position: 287-448
Cow position: chr27:20570222-20570056 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 15, 150

Conread position: 291-447
Cow position: chr27:22559725-22559889 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 153

Conread position: 292-448
Cow position: chr27:8263239-8263400 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 146

Conread position: 314-445
Cow position: chr27:15215307-15215170 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 124

Conread position: 319-448
Cow position: chr27:20085633-20085502 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 110

Conread position: 330-446
Cow position: chr27:21976106-21975992 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 50

Show alignments to all cow chromosomes.