Cow genome map

Conread name: Ova1-OVRM10035D03

Conread position: 1-138
Cow position: chr29:24952287-24952424 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 40

Conread position: 1-138
Cow position: chr29:26415615-26415752 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-445
Cow position: chr29:109281-109709 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 112

Conread position: 1-447
Cow position: chr29:10652940-10653358 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 39

Conread position: 3-447
Cow position: chr29:9911765-9912192 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 128

Conread position: 3-447
Cow position: chr29:32963144-32963565 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 3-448
Cow position: chr29:94966-94540 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 63

Conread position: 7-395
Cow position: chr29:19338567-19338952 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 116

Conread position: 7-447
Cow position: chr29:16195435-16195858 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 84

Conread position: 8-446
Cow position: chr29:1021880-1022311 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 42

Conread position: 11-448
Cow position: chr29:2984468-2984908 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 32

Conread position: 25-448
Cow position: chr29:41530431-41530867 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 272

Conread position: 42-446
Cow position: chr29:12784360-12783945 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 234

Conread position: 44-403
Cow position: chr29:4065677-4066058 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 169

Conread position: 46-448
Cow position: chr29:22175319-22175698 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 76

Conread position: 132-447
Cow position: chr29:356024-356337 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 21

Conread position: 140-440
Cow position: chr29:11696240-11696539 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 79

Conread position: 146-448
Cow position: chr29:19428379-19428676 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 56

Conread position: 148-425
Cow position: chr29:2644588-2644304 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 114, 9

Conread position: 148-437
Cow position: chr29:37292494-37292786 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 7, 18

Conread position: 149-431
Cow position: chr29:40891985-40891695 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 150-420
Cow position: chr29:9686284-9686009 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 133

Conread position: 151-448
Cow position: chr29:25333735-25333442 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 112

Conread position: 153-448
Cow position: chr29:8669076-8669383 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 47, 179

Conread position: 155-448
Cow position: chr29:6217825-6217537 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 48, 90

Conread position: 160-446
Cow position: chr29:20178398-20178119 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 8, 52

Conread position: 161-448
Cow position: chr29:4120577-4120871 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 140, 13

Conread position: 162-447
Cow position: chr29:31926560-31926273 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 74

Conread position: 163-416
Cow position: chr29:3502792-3503042 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 167, 39

Conread position: 163-431
Cow position: chr29:16657422-16657695 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 99, 39

Conread position: 163-448
Cow position: chr29:24952417-24952705 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 53

Conread position: 164-435
Cow position: chr29:12798662-12798926 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 37, 58

Conread position: 164-440
Cow position: chr29:7666299-7666020 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 33

Conread position: 165-398
Cow position: chr29:8164130-8163890 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 142

Conread position: 165-446
Cow position: chr29:32290335-32290624 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 101

Conread position: 165-448
Cow position: chr29:2071835-2071555 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 119

Conread position: 165-448
Cow position: chr29:35291832-35292109 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 96

Conread position: 165-448
Cow position: chr29:39567421-39567703 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 126

Conread position: 166-394
Cow position: chr29:19907090-19907319 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 63

Conread position: 166-395
Cow position: chr29:29477298-29477069 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 110

Conread position: 166-402
Cow position: chr29:18878767-18878526 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 103

Conread position: 166-421
Cow position: chr29:2415077-2414820 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 96, 35

Conread position: 166-428
Cow position: chr29:35281237-35281496 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 135, 35

Conread position: 166-438
Cow position: chr29:28195785-28195508 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 160

Conread position: 166-439
Cow position: chr29:479120-479394 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 161

Conread position: 166-441
Cow position: chr29:42406397-42406685 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 34

Conread position: 166-446
Cow position: chr29:11684746-11685022 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 31, 95

Conread position: 166-448
Cow position: chr29:22069013-22068723 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 88

Conread position: 166-448
Cow position: chr29:26017777-26017485 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 35, 61

Conread position: 167-448
Cow position: chr29:29056918-29057196 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 63

Conread position: 172-431
Cow position: chr29:32799963-32799704 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 88

Conread position: 172-448
Cow position: chr29:12005024-12004745 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 88

Conread position: 172-448
Cow position: chr29:18212242-18211977 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 158, 114

Conread position: 172-448
Cow position: chr29:26318934-26319186 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 129, 30

Conread position: 173-442
Cow position: chr29:29769605-29769340 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 28, 87

Conread position: 173-448
Cow position: chr29:35738529-35738255 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 180

Conread position: 176-399
Cow position: chr29:4194377-4194148 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 18, 69

Conread position: 176-447
Cow position: chr29:26334645-26334371 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 24, 30

Conread position: 176-448
Cow position: chr29:22936025-22936289 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 154, 18

Conread position: 178-442
Cow position: chr29:26329964-26330217 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 123, 15

Conread position: 178-443
Cow position: chr29:4647240-4646983 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 150, 71

Conread position: 178-445
Cow position: chr29:6293721-6293464 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 65

Conread position: 182-444
Cow position: chr29:27858542-27858808 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 76

Conread position: 182-448
Cow position: chr29:11915567-11915844 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 15, 7

Conread position: 183-447
Cow position: chr29:707194-706933 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 18, 46

Conread position: 185-448
Cow position: chr29:36183029-36183298 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 58

Conread position: 185-448
Cow position: chr29:44378665-44378397 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 81, 106

Conread position: 186-438
Cow position: chr29:10235361-10235123 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 56

Conread position: 189-448
Cow position: chr29:17409086-17409352 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 101

Conread position: 190-448
Cow position: chr29:25474665-25474940 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 6, 263

Conread position: 195-448
Cow position: chr29:4520099-4520357 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 65

Conread position: 195-448
Cow position: chr29:17668259-17668508 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 67, 130

Conread position: 196-448
Cow position: chr29:6286393-6286144 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 86, 64

Conread position: 199-431
Cow position: chr29:43495827-43496049 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 104, 61

Conread position: 201-447
Cow position: chr29:39642946-39643192 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 100, 69

Conread position: 203-445
Cow position: chr29:19821068-19821298 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 98, 63

Conread position: 204-446
Cow position: chr29:22778410-22778160 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 12, 120

Conread position: 216-447
Cow position: chr29:463869-463638 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 61

Conread position: 219-448
Cow position: chr29:6337450-6337680 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 82, 41

Conread position: 219-448
Cow position: chr29:38580763-38580997 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 43, 88

Conread position: 224-448
Cow position: chr29:41364902-41365128 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 36

Conread position: 234-441
Cow position: chr29:5652523-5652715 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 52

Conread position: 234-448
Cow position: chr29:11054051-11053842 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 12

Conread position: 239-446
Cow position: chr29:30188533-30188322 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 27

Conread position: 241-448
Cow position: chr29:44988972-44988773 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 19

Conread position: 242-448
Cow position: chr29:11646914-11647111 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 18

Conread position: 243-448
Cow position: chr29:4334539-4334743 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 59, 27

Conread position: 249-448
Cow position: chr29:17301342-17301551 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 13, 82

Conread position: 259-448
Cow position: chr29:4494949-4495138 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 62

Conread position: 262-442
Cow position: chr29:456966-456777 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 63

Conread position: 266-448
Cow position: chr29:12025637-12025450 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 36, 57

Conread position: 273-445
Cow position: chr29:19186590-19186754 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 14

Conread position: 275-428
Cow position: chr29:25432246-25432397 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 46

Conread position: 275-448
Cow position: chr29:4085162-4085330 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 120

Conread position: 286-448
Cow position: chr29:44008928-44008763 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 35

Conread position: 291-448
Cow position: chr29:2055916-2056078 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 33

Conread position: 314-446
Cow position: chr29:11489841-11489706 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 122

Show alignments to all cow chromosomes.