Cow genome map
| Conread name: | Ova1-OVRM10212B12 |
| Conread position: | 178-579 |
| Cow position: | chr1:40512839-40512423 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 187-552 |
| Cow position: | chr1:29033334-29033707 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 187-555 |
| Cow position: | chr1:67328045-67327677 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 191-550 |
| Cow position: | chr1:55321923-55321558 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 238 |
| Conread position: | 192-456 |
| Cow position: | chr1:21720441-21720704 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 179, 7 |
| Conread position: | 193-504 |
| Cow position: | chr1:78361374-78361682 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 194-376 |
| Cow position: | chr1:58179478-58179293 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 203-367 |
| Cow position: | chr1:29413906-29413747 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 203-555 |
| Cow position: | chr1:18013270-18012913 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 207-555 |
| Cow position: | chr1:33389361-33389724 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 217 |
| Conread position: | 210-668 |
| Cow position: | chr1:67287076-67287558 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 64 |
| Conread position: | 236-530 |
| Cow position: | chr1:23052056-23052357 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 242-552 |
| Cow position: | chr1:67315222-67315530 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 249-672 |
| Cow position: | chr1:53198823-53199279 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 250-672 |
| Cow position: | chr1:40053630-40054093 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 176 |
| Conread position: | 251-555 |
| Cow position: | chr1:49973904-49973596 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 254-672 |
| Cow position: | chr1:72186591-72186140 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 255-554 |
| Cow position: | chr1:58336126-58336429 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 257-555 |
| Cow position: | chr1:30534731-30534429 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 24 |
| Conread position: | 258-673 |
| Cow position: | chr1:76545243-76544796 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 259-673 |
| Cow position: | chr1:63605484-63605036 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 7 |
| Conread position: | 262-555 |
| Cow position: | chr1:21999658-21999362 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 7 |
| Conread position: | 262-555 |
| Cow position: | chr1:57366833-57366533 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 262-555 |
| Cow position: | chr1:76752354-76752057 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 266-513 |
| Cow position: | chr1:33712371-33712616 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 105, 10 |
| Conread position: | 267-555 |
| Cow position: | chr1:8825353-8825644 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 269-672 |
| Cow position: | chr1:102549540-102549962 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 270-555 |
| Cow position: | chr1:48246148-48246426 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 270-569 |
| Cow position: | chr1:17941481-17941182 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 281-426 |
| Cow position: | chr1:59674766-59674916 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 281-554 |
| Cow position: | chr1:97226395-97226118 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 5 |
| Conread position: | 281-555 |
| Cow position: | chr1:3385704-3385427 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 281-555 |
| Cow position: | chr1:28873390-28873669 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:42736768-42737047 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:58883751-58883473 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 281-555 |
| Cow position: | chr1:62244331-62244051 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:69922122-69921843 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 281-555 |
| Cow position: | chr1:73070740-73070460 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:79456656-79456378 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 281-555 |
| Cow position: | chr1:88131087-88131366 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:91892807-91892527 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:94659998-94660267 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 281-555 |
| Cow position: | chr1:99913733-99914012 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-673 |
| Cow position: | chr1:33551240-33551666 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 281-673 |
| Cow position: | chr1:93854837-93855259 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 281-673 |
| Cow position: | chr1:102434723-102434298 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 282-555 |
| Cow position: | chr1:85882314-85882587 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 282-673 |
| Cow position: | chr1:82923862-82923447 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 285-502 |
| Cow position: | chr1:30283230-30283008 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 86, 191 |
| Conread position: | 285-554 |
| Cow position: | chr1:60339618-60339890 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 129 |
| Conread position: | 290-673 |
| Cow position: | chr1:31418192-31417777 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 291-673 |
| Cow position: | chr1:72081104-72081506 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 24 |
| Conread position: | 296-554 |
| Cow position: | chr1:17012415-17012151 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr1:20829213-20829477 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr1:31397014-31397278 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr1:85792010-85792269 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 117 |
| Conread position: | 296-662 |
| Cow position: | chr1:9382224-9381819 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 296-663 |
| Cow position: | chr1:40574537-40574943 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 296-668 |
| Cow position: | chr1:69766786-69767189 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-672 |
| Cow position: | chr1:28711240-28711628 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 266 |
| Conread position: | 296-672 |
| Cow position: | chr1:39544093-39544505 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 234 |
| Conread position: | 296-672 |
| Cow position: | chr1:86547811-86547403 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 298-663 |
| Cow position: | chr1:34692558-34692946 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 305-552 |
| Cow position: | chr1:17036224-17035973 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 305-554 |
| Cow position: | chr1:11291773-11291520 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 187 |
| Conread position: | 305-554 |
| Cow position: | chr1:89425906-89426161 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 305-668 |
| Cow position: | chr1:82564836-82565238 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 305-672 |
| Cow position: | chr1:56490183-56490590 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 305-672 |
| Cow position: | chr1:80358848-80358442 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 308-555 |
| Cow position: | chr1:56143995-56143743 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 99 |
| Conread position: | 309-554 |
| Cow position: | chr1:66999363-66999603 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 309-672 |
| Cow position: | chr1:13450543-13450943 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 119 |
| Conread position: | 312-549 |
| Cow position: | chr1:43571062-43570822 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 58, 203 |
| Conread position: | 322-672 |
| Cow position: | chr1:59209801-59209411 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 331-555 |
| Cow position: | chr1:5502330-5502560 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.