Cow genome map

Conread name: Ova1-OVRM10212B12

Conread position: 178-555
Cow position: chr3:48230363-48229998 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 13

Conread position: 185-663
Cow position: chr3:6685898-6686415 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 279

Conread position: 191-550
Cow position: chr3:46015753-46016101 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 258
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 267, 22

Conread position: 191-554
Cow position: chr3:66991193-66991554 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 122

Conread position: 192-387
Cow position: chr3:50127616-50127409 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 193-555
Cow position: chr3:42631525-42631891 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 248
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 19, 58

Conread position: 198-521
Cow position: chr3:64357723-64357411 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 19

Conread position: 198-555
Cow position: chr3:32616897-32616527 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 29, 45

Conread position: 198-600
Cow position: chr3:58947737-58948144 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 27

Conread position: 199-610
Cow position: chr3:26836647-26836261 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 291
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 183, 79

Conread position: 200-555
Cow position: chr3:49333893-49334255 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 218

Conread position: 203-547
Cow position: chr3:31415651-31416000 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 62, 22

Conread position: 203-555
Cow position: chr3:52864021-52863663 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 213-553
Cow position: chr3:18356365-18356031 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 228-555
Cow position: chr3:77423950-77424280 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 38

Conread position: 234-673
Cow position: chr3:18463420-18462952 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 84

Conread position: 235-554
Cow position: chr3:3981894-3982213 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 211

Conread position: 238-429
Cow position: chr3:2710792-2710597 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 116
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 133, 77

Conread position: 250-554
Cow position: chr3:23290188-23289870 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 251-555
Cow position: chr3:4027922-4028210 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 131, 27

Conread position: 254-555
Cow position: chr3:75041001-75040696 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 21

Conread position: 255-555
Cow position: chr3:5954016-5953714 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 257-673
Cow position: chr3:19756787-19756333 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 30

Conread position: 262-548
Cow position: chr3:7481054-7480769 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 18

Conread position: 262-553
Cow position: chr3:72630248-72630539 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 15

Conread position: 262-555
Cow position: chr3:18542230-18541935 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 18

Conread position: 262-558
Cow position: chr3:594754-595053 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 15

Conread position: 265-555
Cow position: chr3:63003368-63003075 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 36

Conread position: 266-555
Cow position: chr3:49677972-49678264 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 15

Conread position: 268-555
Cow position: chr3:56340243-56339953 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 9

Conread position: 270-555
Cow position: chr3:16073914-16074194 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 112, 88

Conread position: 270-555
Cow position: chr3:49137355-49137074 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 45

Conread position: 270-555
Cow position: chr3:59861551-59861839 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 14

Conread position: 271-555
Cow position: chr3:5995515-5995229 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 6

Conread position: 274-519
Cow position: chr3:45774231-45773971 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 274-553
Cow position: chr3:50915514-50915796 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 15

Conread position: 274-555
Cow position: chr3:66620358-66620648 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 279-554
Cow position: chr3:14439576-14439295 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 61

Conread position: 281-449
Cow position: chr3:48060637-48060463 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 27

Conread position: 281-554
Cow position: chr3:40823582-40823859 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 34

Conread position: 281-555
Cow position: chr3:5883733-5884011 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 20

Conread position: 281-555
Cow position: chr3:10239848-10240128 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 34

Conread position: 281-555
Cow position: chr3:30314762-30315026 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 34

Conread position: 281-555
Cow position: chr3:57484535-57484258 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 281-555
Cow position: chr3:78027215-78026952 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 90, 34

Conread position: 281-663
Cow position: chr3:42432426-42432826 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 11

Conread position: 284-555
Cow position: chr3:6878858-6878596 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 17

Conread position: 285-552
Cow position: chr3:49613786-49613512 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-672
Cow position: chr3:22336079-22336505 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 291-431
Cow position: chr3:19944247-19944393 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 296-554
Cow position: chr3:29331069-29330805 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-554
Cow position: chr3:46861101-46860837 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-663
Cow position: chr3:32622835-32622437 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-671
Cow position: chr3:46679633-46680043 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 206

Conread position: 296-672
Cow position: chr3:3523223-3523636 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 183

Conread position: 296-672
Cow position: chr3:18859616-18860027 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 133

Conread position: 296-672
Cow position: chr3:24314669-24315083 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 171

Conread position: 296-672
Cow position: chr3:36117864-36118278 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 225

Conread position: 296-672
Cow position: chr3:37969250-37969659 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 176

Conread position: 296-672
Cow position: chr3:40339910-40339498 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-672
Cow position: chr3:64027884-64027469 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-672
Cow position: chr3:66890761-66890349 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 346

Conread position: 296-672
Cow position: chr3:68873553-68873139 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 408

Conread position: 298-673
Cow position: chr3:45895347-45894935 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 215

Conread position: 298-673
Cow position: chr3:45974708-45975118 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 213

Conread position: 301-553
Cow position: chr3:50011884-50012138 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 100

Conread position: 304-673
Cow position: chr3:49544994-49544591 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 147

Conread position: 305-552
Cow position: chr3:68699762-68699502 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 305-672
Cow position: chr3:20380754-20381157 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 305-672
Cow position: chr3:64650837-64651243 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 308-672
Cow position: chr3:6782598-6782987 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 194

Conread position: 319-535
Cow position: chr3:74439528-74439750 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.