Cow genome map
| Conread name: | Ova1-OVRM10212B12 |
| Conread position: | 178-555 |
| Cow position: | chr3:48230363-48229998 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 185-663 |
| Cow position: | chr3:6685898-6686415 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 279 |
| Conread position: | 191-550 |
| Cow position: | chr3:46015753-46016101 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 267, 22 |
| Conread position: | 191-554 |
| Cow position: | chr3:66991193-66991554 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 122 |
| Conread position: | 192-387 |
| Cow position: | chr3:50127616-50127409 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 193-555 |
| Cow position: | chr3:42631525-42631891 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 198-521 |
| Cow position: | chr3:64357723-64357411 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 198-555 |
| Cow position: | chr3:32616897-32616527 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 198-600 |
| Cow position: | chr3:58947737-58948144 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 27 |
| Conread position: | 199-610 |
| Cow position: | chr3:26836647-26836261 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 183, 79 |
| Conread position: | 200-555 |
| Cow position: | chr3:49333893-49334255 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 218 |
| Conread position: | 203-547 |
| Cow position: | chr3:31415651-31416000 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 203-555 |
| Cow position: | chr3:52864021-52863663 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 213-553 |
| Cow position: | chr3:18356365-18356031 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 228-555 |
| Cow position: | chr3:77423950-77424280 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 234-673 |
| Cow position: | chr3:18463420-18462952 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 235-554 |
| Cow position: | chr3:3981894-3982213 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 211 |
| Conread position: | 238-429 |
| Cow position: | chr3:2710792-2710597 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 133, 77 |
| Conread position: | 250-554 |
| Cow position: | chr3:23290188-23289870 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 251-555 |
| Cow position: | chr3:4027922-4028210 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 131, 27 |
| Conread position: | 254-555 |
| Cow position: | chr3:75041001-75040696 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 255-555 |
| Cow position: | chr3:5954016-5953714 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 257-673 |
| Cow position: | chr3:19756787-19756333 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 262-548 |
| Cow position: | chr3:7481054-7480769 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 262-553 |
| Cow position: | chr3:72630248-72630539 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 262-555 |
| Cow position: | chr3:18542230-18541935 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 262-558 |
| Cow position: | chr3:594754-595053 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 265-555 |
| Cow position: | chr3:63003368-63003075 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 266-555 |
| Cow position: | chr3:49677972-49678264 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 268-555 |
| Cow position: | chr3:56340243-56339953 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 270-555 |
| Cow position: | chr3:16073914-16074194 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 88 |
| Conread position: | 270-555 |
| Cow position: | chr3:49137355-49137074 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 270-555 |
| Cow position: | chr3:59861551-59861839 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 271-555 |
| Cow position: | chr3:5995515-5995229 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 6 |
| Conread position: | 274-519 |
| Cow position: | chr3:45774231-45773971 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 274-553 |
| Cow position: | chr3:50915514-50915796 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 274-555 |
| Cow position: | chr3:66620358-66620648 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 279-554 |
| Cow position: | chr3:14439576-14439295 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 281-449 |
| Cow position: | chr3:48060637-48060463 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 281-554 |
| Cow position: | chr3:40823582-40823859 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr3:5883733-5884011 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 281-555 |
| Cow position: | chr3:10239848-10240128 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr3:30314762-30315026 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-555 |
| Cow position: | chr3:57484535-57484258 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 281-555 |
| Cow position: | chr3:78027215-78026952 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 281-663 |
| Cow position: | chr3:42432426-42432826 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 284-555 |
| Cow position: | chr3:6878858-6878596 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 285-552 |
| Cow position: | chr3:49613786-49613512 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 285-672 |
| Cow position: | chr3:22336079-22336505 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 291-431 |
| Cow position: | chr3:19944247-19944393 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 296-554 |
| Cow position: | chr3:29331069-29330805 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr3:46861101-46860837 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-663 |
| Cow position: | chr3:32622835-32622437 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-671 |
| Cow position: | chr3:46679633-46680043 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 206 |
| Conread position: | 296-672 |
| Cow position: | chr3:3523223-3523636 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 183 |
| Conread position: | 296-672 |
| Cow position: | chr3:18859616-18860027 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 133 |
| Conread position: | 296-672 |
| Cow position: | chr3:24314669-24315083 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 171 |
| Conread position: | 296-672 |
| Cow position: | chr3:36117864-36118278 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 225 |
| Conread position: | 296-672 |
| Cow position: | chr3:37969250-37969659 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 176 |
| Conread position: | 296-672 |
| Cow position: | chr3:40339910-40339498 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-672 |
| Cow position: | chr3:64027884-64027469 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-672 |
| Cow position: | chr3:66890761-66890349 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 346 |
| Conread position: | 296-672 |
| Cow position: | chr3:68873553-68873139 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 408 |
| Conread position: | 298-673 |
| Cow position: | chr3:45895347-45894935 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 215 |
| Conread position: | 298-673 |
| Cow position: | chr3:45974708-45975118 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 213 |
| Conread position: | 301-553 |
| Cow position: | chr3:50011884-50012138 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 304-673 |
| Cow position: | chr3:49544994-49544591 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 147 |
| Conread position: | 305-552 |
| Cow position: | chr3:68699762-68699502 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 305-672 |
| Cow position: | chr3:20380754-20381157 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 305-672 |
| Cow position: | chr3:64650837-64651243 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 308-672 |
| Cow position: | chr3:6782598-6782987 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 194 |
| Conread position: | 319-535 |
| Cow position: | chr3:74439528-74439750 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.