Cow genome map
| Conread name: | Ova1-OVRM10212B12 |
| Conread position: | 185-343 |
| Cow position: | chr9:34721536-34721700 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 185-552 |
| Cow position: | chr9:13476824-13476446 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 187-407 |
| Cow position: | chr9:2000938-2000706 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 187-506 |
| Cow position: | chr9:3354613-3354290 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 184, 38 |
| Conread position: | 193-555 |
| Cow position: | chr9:4281842-4282214 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 194-417 |
| Cow position: | chr9:9705638-9705867 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 194-673 |
| Cow position: | chr9:44818261-44818761 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 198-555 |
| Cow position: | chr9:3803421-3803781 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 77 |
| Conread position: | 201-555 |
| Cow position: | chr9:42555998-42556365 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 204-555 |
| Cow position: | chr9:28688181-28688548 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 207-555 |
| Cow position: | chr9:59511471-59511826 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 213-554 |
| Cow position: | chr9:64119322-64119658 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 220-533 |
| Cow position: | chr9:60464530-60464212 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 242-672 |
| Cow position: | chr9:45873464-45873930 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 249-514 |
| Cow position: | chr9:25483995-25484267 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 249-554 |
| Cow position: | chr9:131067-130752 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 249-672 |
| Cow position: | chr9:28678095-28678557 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 250-672 |
| Cow position: | chr9:64018336-64017875 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 262-555 |
| Cow position: | chr9:59174012-59173709 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 263-663 |
| Cow position: | chr9:37162666-37162235 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 266-555 |
| Cow position: | chr9:1980135-1980428 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 270-555 |
| Cow position: | chr9:7002937-7003226 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 270-555 |
| Cow position: | chr9:22653717-22654010 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 270-555 |
| Cow position: | chr9:59536250-59536534 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 270-673 |
| Cow position: | chr9:18509648-18509210 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 271-581 |
| Cow position: | chr9:2171210-2171524 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 176 |
| Conread position: | 271-663 |
| Cow position: | chr9:5004151-5004553 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 6 |
| Conread position: | 281-552 |
| Cow position: | chr9:37971046-37970770 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 281-555 |
| Cow position: | chr9:4532656-4532935 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 281-555 |
| Cow position: | chr9:6830344-6830067 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 281-555 |
| Cow position: | chr9:60277857-60277579 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 282-552 |
| Cow position: | chr9:59444011-59444285 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 282-663 |
| Cow position: | chr9:9013264-9013679 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 282-673 |
| Cow position: | chr9:16175933-16176360 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 283-663 |
| Cow position: | chr9:27034847-27035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 285-516 |
| Cow position: | chr9:60651551-60651314 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 285-550 |
| Cow position: | chr9:25755062-25754792 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 244 |
| Conread position: | 285-554 |
| Cow position: | chr9:780643-780368 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 289-554 |
| Cow position: | chr9:31064598-31064869 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 291-555 |
| Cow position: | chr9:3566678-3566398 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 295-554 |
| Cow position: | chr9:28021975-28022241 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 119 |
| Conread position: | 296-554 |
| Cow position: | chr9:25035673-25035409 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr9:36724674-36724938 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-554 |
| Cow position: | chr9:49177655-49177391 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-672 |
| Cow position: | chr9:51210854-51211269 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 298-476 |
| Cow position: | chr9:2487956-2487776 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 305-541 |
| Cow position: | chr9:16268553-16268795 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 305-554 |
| Cow position: | chr9:6050861-6050608 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 305-555 |
| Cow position: | chr9:42309869-42310125 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 308-554 |
| Cow position: | chr9:1076013-1075761 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 308-672 |
| Cow position: | chr9:30826866-30827264 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 144 |
| Conread position: | 331-555 |
| Cow position: | chr9:3543052-3543282 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.