Cow genome map

Conread name: Ova1-OVRM10212B12

Conread position: 187-555
Cow position: chrX:6282772-6282406 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 138

Conread position: 191-548
Cow position: chrX:17667917-17667556 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 26

Conread position: 191-555
Cow position: chrX:22130275-22129895 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 33

Conread position: 191-672
Cow position: chrX:44387100-44387613 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 286

Conread position: 193-555
Cow position: chrX:18534470-18534814 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 31

Conread position: 196-555
Cow position: chrX:40246897-40246531 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 203-548
Cow position: chrX:6250442-6250092 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 59, 41

Conread position: 203-555
Cow position: chrX:10417316-10416949 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 263
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 20

Conread position: 206-555
Cow position: chrX:24112829-24112484 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 72

Conread position: 210-432
Cow position: chrX:16016679-16016452 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 23

Conread position: 213-555
Cow position: chrX:2536458-2536103 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 213-663
Cow position: chrX:13053030-13053490 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 85

Conread position: 218-555
Cow position: chrX:31081972-31082318 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 243
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 89, 7

Conread position: 227-672
Cow position: chrX:11464996-11464509 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 242-534
Cow position: chrX:22814440-22814718 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 249-554
Cow position: chrX:10531530-10531216 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 249-554
Cow position: chrX:18219425-18219739 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 249-555
Cow position: chrX:21829562-21829874 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 53

Conread position: 251-536
Cow position: chrX:5299181-5298893 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 35

Conread position: 251-555
Cow position: chrX:21058836-21059131 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 14

Conread position: 251-672
Cow position: chrX:21490228-21490678 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 53

Conread position: 251-673
Cow position: chrX:22488222-22488641 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 50

Conread position: 251-673
Cow position: chrX:29285478-29285934 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 222

Conread position: 254-555
Cow position: chrX:16699345-16699650 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 254-663
Cow position: chrX:30183849-30183434 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 257-459
Cow position: chrX:18954477-18954271 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 6, 32

Conread position: 257-673
Cow position: chrX:26528024-26528472 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 21

Conread position: 261-555
Cow position: chrX:20697045-20696756 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 90, 104

Conread position: 262-555
Cow position: chrX:2482584-2482286 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 262-555
Cow position: chrX:29096255-29096551 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 17

Conread position: 266-477
Cow position: chrX:28603397-28603190 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 105, 10

Conread position: 266-554
Cow position: chrX:30056707-30057002 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 10

Conread position: 269-673
Cow position: chrX:12478782-12479201 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 270-554
Cow position: chrX:23391538-23391250 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 12

Conread position: 270-673
Cow position: chrX:29794058-29793628 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 14

Conread position: 275-668
Cow position: chrX:1833883-1834307 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 281-555
Cow position: chrX:15127171-15126893 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 34

Conread position: 281-555
Cow position: chrX:23277091-23277368 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 8

Conread position: 281-555
Cow position: chrX:26767127-26766849 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 5

Conread position: 281-673
Cow position: chrX:21222999-21223420 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 34

Conread position: 281-673
Cow position: chrX:29853498-29853071 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 27

Conread position: 282-554
Cow position: chrX:16812531-16812254 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 239

Conread position: 285-554
Cow position: chrX:2562790-2562515 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-554
Cow position: chrX:7751967-7752241 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 137

Conread position: 285-554
Cow position: chrX:12343023-12343296 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 163

Conread position: 285-554
Cow position: chrX:12353307-12353582 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-554
Cow position: chrX:12654693-12654420 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 216

Conread position: 285-554
Cow position: chrX:12803797-12803523 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 253

Conread position: 285-554
Cow position: chrX:13398053-13397778 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-554
Cow position: chrX:20359984-20359709 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-554
Cow position: chrX:27426253-27425978 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-569
Cow position: chrX:28585047-28585334 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 277

Conread position: 285-672
Cow position: chrX:13076630-13076204 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 285-672
Cow position: chrX:13097204-13096778 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 286-673
Cow position: chrX:26758530-26758117 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 29

Conread position: 291-542
Cow position: chrX:23019404-23019660 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 296-436
Cow position: chrX:507325-507471 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 296-544
Cow position: chrX:8454830-8455086 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-552
Cow position: chrX:30055657-30055395 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-554
Cow position: chrX:2101937-2102200 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 157

Conread position: 296-554
Cow position: chrX:2604126-2604390 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-569
Cow position: chrX:9125433-9125717 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 74, 239

Conread position: 296-575
Cow position: chrX:17478444-17478159 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 179
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 75, 0

Conread position: 296-663
Cow position: chrX:21304448-21304041 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-672
Cow position: chrX:5863476-5863887 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 206

Conread position: 296-672
Cow position: chrX:18659704-18659295 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 296-672
Cow position: chrX:21340482-21340893 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 296-672
Cow position: chrX:28634338-28633934 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 126

Conread position: 296-672
Cow position: chrX:31493498-31493911 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 296-672
Cow position: chrX:37849093-37849506 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 101

Conread position: 301-427
Cow position: chrX:24136314-24136183 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 70, 113

Conread position: 304-555
Cow position: chrX:23041034-23040779 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 173

Conread position: 305-443
Cow position: chrX:31187159-31187015 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 305-494
Cow position: chrX:29947794-29947989 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 305-550
Cow position: chrX:31198534-31198785 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 305-554
Cow position: chrX:5336399-5336144 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 305-554
Cow position: chrX:7030273-7030526 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 117

Conread position: 305-554
Cow position: chrX:7093685-7093940 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 305-554
Cow position: chrX:14594858-14595113 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 305-672
Cow position: chrX:3421098-3420713 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 123

Conread position: 305-672
Cow position: chrX:20315968-20315569 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 82

Conread position: 305-672
Cow position: chrX:22525517-22525111 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 305-672
Cow position: chrX:26400090-26399688 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 308-554
Cow position: chrX:24089491-24089744 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 62, 171

Conread position: 308-555
Cow position: chrX:13413043-13412789 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 309-668
Cow position: chrX:5323632-5323234 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 309-672
Cow position: chrX:8588269-8588671 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 310-554
Cow position: chrX:29950492-29950240 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 319-672
Cow position: chrX:3376011-3375619 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 331-673
Cow position: chrX:21589087-21589462 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 346

Conread position: 337-548
Cow position: chrX:5833312-5833095 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.