Cow genome map
| Conread name: | Ova1-OVRM10212F12 |
| Conread position: | 1-174 |
| Cow position: | chr1:59648285-59648453 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 1-205 |
| Cow position: | chr1:43570422-43570219 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 1-205 |
| Cow position: | chr1:84226800-84227003 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 164, 39 |
| Conread position: | 1-207 |
| Cow position: | chr1:7141795-7141590 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 1-253 |
| Cow position: | chr1:30063367-30063608 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 174, 42 |
| Conread position: | 1-271 |
| Cow position: | chr1:93855510-93855792 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 1-272 |
| Cow position: | chr1:22843634-22843924 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 1-274 |
| Cow position: | chr1:42737451-42737724 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 39 |
| Conread position: | 1-274 |
| Cow position: | chr1:44100403-44100125 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 1-274 |
| Cow position: | chr1:57972712-57972428 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 130, 39 |
| Conread position: | 1-274 |
| Cow position: | chr1:65387313-65387598 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 180, 39 |
| Conread position: | 1-278 |
| Cow position: | chr1:15027354-15027635 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 1-278 |
| Cow position: | chr1:44972312-44972600 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 120, 39 |
| Conread position: | 2-175 |
| Cow position: | chr1:67287815-67287989 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-199 |
| Cow position: | chr1:18026804-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 2-202 |
| Cow position: | chr1:31365103-31364905 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 2-205 |
| Cow position: | chr1:17011739-17011538 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 2-205 |
| Cow position: | chr1:85792673-85792875 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 2-205 |
| Cow position: | chr1:91900012-91900220 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-213 |
| Cow position: | chr1:67292625-67292832 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 162, 38 |
| Conread position: | 2-218 |
| Cow position: | chr1:99019015-99018800 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 2-231 |
| Cow position: | chr1:18274187-18274417 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 2-245 |
| Cow position: | chr1:55321078-55320831 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 163, 39 |
| Conread position: | 2-268 |
| Cow position: | chr1:39544786-39545058 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 2-268 |
| Cow position: | chr1:82912143-82911883 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 207, 40 |
| Conread position: | 2-271 |
| Cow position: | chr1:33852282-33852551 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 176, 38 |
| Conread position: | 2-271 |
| Cow position: | chr1:40575208-40575485 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-271 |
| Cow position: | chr1:57697171-57696884 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 2-271 |
| Cow position: | chr1:59209155-59208872 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-272 |
| Cow position: | chr1:31402469-31402199 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 2-272 |
| Cow position: | chr1:98658913-98658634 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 165, 38 |
| Conread position: | 2-274 |
| Cow position: | chr1:3934266-3933980 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-274 |
| Cow position: | chr1:32566927-32566647 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 2-274 |
| Cow position: | chr1:32908814-32909105 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 134, 12 |
| Conread position: | 2-274 |
| Cow position: | chr1:73198030-73197745 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 39 |
| Conread position: | 2-274 |
| Cow position: | chr1:74285795-74285511 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 2-274 |
| Cow position: | chr1:79111483-79111765 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 193, 38 |
| Conread position: | 2-274 |
| Cow position: | chr1:91892124-91891843 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 2-274 |
| Cow position: | chr1:94660669-94660952 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 2-274 |
| Cow position: | chr1:102781301-102781036 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 218, 37 |
| Conread position: | 2-276 |
| Cow position: | chr1:80358182-80357896 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-276 |
| Cow position: | chr1:101861070-101860790 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 174, 38 |
| Conread position: | 2-278 |
| Cow position: | chr1:62243649-62243372 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 2-350 |
| Cow position: | chr1:16216681-16216340 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 3-193 |
| Cow position: | chr1:53364552-53364740 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 158, 37 |
| Conread position: | 3-213 |
| Cow position: | chr1:70419385-70419177 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 3-221 |
| Cow position: | chr1:16581509-16581290 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 3-221 |
| Cow position: | chr1:16587085-16586866 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 4-195 |
| Cow position: | chr1:77510768-77510581 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 181, 36 |
| Conread position: | 4-277 |
| Cow position: | chr1:55156005-55155717 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 172, 36 |
| Conread position: | 6-217 |
| Cow position: | chr1:29039038-29039249 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 144, 8 |
| Conread position: | 8-274 |
| Cow position: | chr1:40438177-40437906 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 34 |
| Conread position: | 10-274 |
| Cow position: | chr1:63502828-63503093 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 149, 30 |
| Conread position: | 10-277 |
| Cow position: | chr1:86611144-86611417 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 151, 30 |
| Conread position: | 17-213 |
| Cow position: | chr1:30519607-30519801 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 37-205 |
| Cow position: | chr1:57423809-57423638 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 38-216 |
| Cow position: | chr1:31193691-31193509 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 54-271 |
| Cow position: | chr1:81777478-81777698 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 166 |
| Conread position: | 60-272 |
| Cow position: | chr1:51877957-51877732 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 61-183 |
| Cow position: | chr1:85398109-85398233 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 107-279 |
| Cow position: | chr1:13581882-13581703 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 69, 21 |
Show alignments to all cow chromosomes.