Cow genome map
| Conread name: | Ova1-OVRM10217E10 |
| Conread position: | 1-152 |
| Cow position: | chr5:60968499-60968337 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-219 |
| Cow position: | chr5:34483442-34483666 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 157 |
| Conread position: | 1-272 |
| Cow position: | chr5:34168054-34167780 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 157 |
| Conread position: | 1-315 |
| Cow position: | chr5:37425834-37425519 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 90 |
| Conread position: | 1-331 |
| Cow position: | chr5:51076553-51076885 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 155 |
| Conread position: | 1-357 |
| Cow position: | chr5:328098-328447 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 159, 85 |
| Conread position: | 1-376 |
| Cow position: | chr5:21167041-21167423 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 1-431 |
| Cow position: | chr5:23646925-23647349 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 83 |
| Conread position: | 1-438 |
| Cow position: | chr5:51952470-51952010 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 1-443 |
| Cow position: | chr5:25927604-25928038 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 1-443 |
| Cow position: | chr5:27904500-27904074 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 1-443 |
| Cow position: | chr5:48224491-48224925 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 146 |
| Conread position: | 1-447 |
| Cow position: | chr5:70128232-70127835 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 273, 76 |
| Conread position: | 2-392 |
| Cow position: | chr5:23753128-23753516 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 4-324 |
| Cow position: | chr5:57127102-57126782 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 4-329 |
| Cow position: | chr5:9233997-9234319 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 75 |
| Conread position: | 4-443 |
| Cow position: | chr5:15882379-15882830 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 9-443 |
| Cow position: | chr5:48573688-48574127 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 11-313 |
| Cow position: | chr5:54111994-54111696 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 16-331 |
| Cow position: | chr5:26099302-26099610 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 31-346 |
| Cow position: | chr5:50900959-50900653 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 37-438 |
| Cow position: | chr5:26562212-26561797 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 57-413 |
| Cow position: | chr5:20554725-20555070 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 25 |
| Conread position: | 67-338 |
| Cow position: | chr5:72310722-72310467 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 207, 78 |
| Conread position: | 67-443 |
| Cow position: | chr5:6086541-6086919 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 78 |
| Conread position: | 74-283 |
| Cow position: | chr5:27492488-27492281 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 77-438 |
| Cow position: | chr5:45940607-45940960 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 78-347 |
| Cow position: | chr5:65924684-65924959 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 25, 180 |
| Conread position: | 78-438 |
| Cow position: | chr5:27690055-27690406 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 78-441 |
| Cow position: | chr5:40711430-40711804 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 78-443 |
| Cow position: | chr5:17028100-17027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 78-443 |
| Cow position: | chr5:57935103-57935465 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 73 |
| Conread position: | 80-420 |
| Cow position: | chr5:1398075-1398418 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 87-438 |
| Cow position: | chr5:6896130-6896471 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 90-441 |
| Cow position: | chr5:34678887-34678543 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 93-443 |
| Cow position: | chr5:6987154-6986804 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 113-438 |
| Cow position: | chr5:58793638-58793961 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 88 |
| Conread position: | 116-301 |
| Cow position: | chr5:14513086-14512902 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 61, 31 |
Show alignments to all cow chromosomes.