Cow genome map
| Conread name: | Pig1-30L12 |
| Conread position: | 1-342 |
| Cow position: | chr5:49073733-49074060 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 181, 32 |
| Conread position: | 3-335 |
| Cow position: | chr5:46664477-46664151 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 17-209 |
| Cow position: | chr5:4757698-4757890 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 17-296 |
| Cow position: | chr5:241667-241389 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 17-302 |
| Cow position: | chr5:32154436-32154712 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 17-319 |
| Cow position: | chr5:30579793-30579488 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-319 |
| Cow position: | chr5:54792171-54792469 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-334 |
| Cow position: | chr5:57482073-57482390 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-335 |
| Cow position: | chr5:3964912-3964600 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:4089536-4089219 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:14380607-14380297 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:18122011-18122320 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 166, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:23959850-23960167 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:27908807-27909124 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:35300564-35300247 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:44459948-44459631 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:46776544-46776227 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 17-335 |
| Cow position: | chr5:48467815-48468131 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-337 |
| Cow position: | chr5:24099138-24098820 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-338 |
| Cow position: | chr5:37732817-37732498 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 17-346 |
| Cow position: | chr5:46738108-46738435 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 26-272 |
| Cow position: | chr5:14784905-14785149 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 7 |
| Conread position: | 26-318 |
| Cow position: | chr5:18664248-18663957 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 26-335 |
| Cow position: | chr5:18666450-18666142 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 30-315 |
| Cow position: | chr5:28023972-28023680 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 33-296 |
| Cow position: | chr5:2531705-2531447 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 129, 51 |
| Conread position: | 33-334 |
| Cow position: | chr5:41528308-41528604 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 129, 64 |
| Conread position: | 33-335 |
| Cow position: | chr5:6588569-6588872 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 33-335 |
| Cow position: | chr5:10842970-10843271 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 33-351 |
| Cow position: | chr5:47894087-47894392 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 34-328 |
| Cow position: | chr5:24589214-24588921 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 34-333 |
| Cow position: | chr5:48808288-48808578 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 34-335 |
| Cow position: | chr5:4018750-4019050 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 128, 73 |
| Conread position: | 34-337 |
| Cow position: | chr5:64781562-64781865 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 34-351 |
| Cow position: | chr5:32309147-32309472 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 66 |
| Conread position: | 36-334 |
| Cow position: | chr5:55628439-55628142 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 37-346 |
| Cow position: | chr5:41956891-41957185 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 43-334 |
| Cow position: | chr5:27002472-27002189 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 57 |
| Conread position: | 52-313 |
| Cow position: | chr5:26084144-26084403 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 54-327 |
| Cow position: | chr5:43003525-43003256 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 108-335 |
| Cow position: | chr5:26078849-26079072 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 108-341 |
| Cow position: | chr5:31706952-31706716 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 147-335 |
| Cow position: | chr5:24577251-24577063 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 165 |
Show alignments to all cow chromosomes.