Cow genome map

Conread name: Pig1-92A03

Conread position: 311-537
Cow position: chr11:75255298-75255517 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 8

Conread position: 312-528
Cow position: chr11:43526256-43526024 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 165

Conread position: 312-532
Cow position: chr11:14941719-14941502 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 50

Conread position: 313-537
Cow position: chr11:42519614-42519846 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 71, 17

Conread position: 314-502
Cow position: chr11:41104448-41104259 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 67, 16

Conread position: 314-519
Cow position: chr11:25331864-25331649 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 16

Conread position: 314-532
Cow position: chr11:20491447-20491676 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 16

Conread position: 314-535
Cow position: chr11:48650671-48650897 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 16

Conread position: 314-537
Cow position: chr11:19238280-19238052 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 68, 16

Conread position: 314-537
Cow position: chr11:51745231-51745460 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 74, 16

Conread position: 316-537
Cow position: chr11:53262656-53262875 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 33

Conread position: 317-537
Cow position: chr11:45889839-45890072 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 319-523
Cow position: chr11:46473800-46473595 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 63, 11

Conread position: 319-535
Cow position: chr11:24967334-24967552 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 62, 11

Conread position: 319-537
Cow position: chr11:65988110-65988337 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 69, 11

Conread position: 321-537
Cow position: chr11:19269193-19268978 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 59, 130

Conread position: 321-537
Cow position: chr11:81518280-81518063 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 323-522
Cow position: chr11:17964070-17963870 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 86, 15

Conread position: 324-537
Cow position: chr11:47566056-47565824 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 326-503
Cow position: chr11:46001785-46001611 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 326-537
Cow position: chr11:4609949-4609739 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 177

Conread position: 327-537
Cow position: chr11:29802686-29802478 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 31

Conread position: 327-537
Cow position: chr11:52832830-52832608 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 327-537
Cow position: chr11:70399746-70399953 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 135

Conread position: 328-537
Cow position: chr11:1668564-1668779 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 60, 182

Conread position: 330-524
Cow position: chr11:47903743-47903943 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 120

Conread position: 333-532
Cow position: chr11:2394171-2393981 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 55

Conread position: 333-532
Cow position: chr11:21136705-21136922 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 333-537
Cow position: chr11:38667924-38667712 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 14, 10

Conread position: 333-537
Cow position: chr11:46705636-46705427 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 95

Conread position: 334-535
Cow position: chr11:23047852-23047653 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 63, 0

Conread position: 334-537
Cow position: chr11:37372202-37372424 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 335-534
Cow position: chr11:63157014-63156812 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 65, 177

Conread position: 335-534
Cow position: chr11:63508320-63508521 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 15, 80

Conread position: 336-498
Cow position: chr11:68422968-68423137 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 138

Conread position: 338-524
Cow position: chr11:33316744-33316555 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 112

Conread position: 340-519
Cow position: chr11:47169105-47168921 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 105

Conread position: 342-535
Cow position: chr11:73499279-73499084 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 348-522
Cow position: chr11:57831640-57831465 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 59

Conread position: 361-537
Cow position: chr11:72035288-72035472 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 364-537
Cow position: chr11:31422666-31422844 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 380-532
Cow position: chr11:17452189-17452341 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 6

Conread position: 381-527
Cow position: chr11:21473163-21473020 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 35

Conread position: 381-536
Cow position: chr11:72082661-72082816 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 381-537
Cow position: chr11:27681453-27681614 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 382-533
Cow position: chr11:2484561-2484409 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 39

Conread position: 383-505
Cow position: chr11:31575956-31576080 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 383-525
Cow position: chr11:2908723-2908866 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 57

Conread position: 383-526
Cow position: chr11:1596499-1596356 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 31

Conread position: 383-532
Cow position: chr11:8828674-8828524 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 383-537
Cow position: chr11:12949989-12949836 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 106

Conread position: 383-537
Cow position: chr11:31894231-31894385 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 383-537
Cow position: chr11:38845307-38845152 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 109

Conread position: 386-525
Cow position: chr11:69824251-69824113 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 386-537
Cow position: chr11:9874277-9874426 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 103

Conread position: 386-537
Cow position: chr11:16000886-16001039 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 388-536
Cow position: chr11:56892780-56892928 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 9, 122

Conread position: 388-536
Cow position: chr11:76392057-76391909 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 9, 20

Conread position: 388-537
Cow position: chr11:34946112-34945958 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 388-537
Cow position: chr11:53452386-53452236 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 388-537
Cow position: chr11:69402289-69402138 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 9, 101

Conread position: 389-532
Cow position: chr11:84795788-84795641 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 8, 25

Conread position: 389-534
Cow position: chr11:9055921-9056068 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 26

Conread position: 389-535
Cow position: chr11:60137655-60137801 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 9, 82

Conread position: 389-537
Cow position: chr11:17151636-17151784 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 32

Conread position: 389-537
Cow position: chr11:39808953-39809101 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 14, 139

Conread position: 389-537
Cow position: chr11:40275640-40275488 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 389-537
Cow position: chr11:40279132-40278980 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 389-537
Cow position: chr11:67236362-67236513 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 8, 0

Conread position: 390-537
Cow position: chr11:19501930-19502081 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 81

Conread position: 390-537
Cow position: chr11:53445740-53445885 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 123, 0

Conread position: 392-537
Cow position: chr11:7001967-7001816 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 393-531
Cow position: chr11:50953598-50953456 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 395-529
Cow position: chr11:19606285-19606417 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 94

Conread position: 396-519
Cow position: chr11:25861636-25861512 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 62

Conread position: 396-519
Cow position: chr11:67745293-67745415 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 397-537
Cow position: chr11:66401669-66401803 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 400-537
Cow position: chr11:11785304-11785446 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 400-537
Cow position: chr11:36701725-36701862 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 42, 109

Conread position: 410-535
Cow position: chr11:13306837-13306712 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 413-532
Cow position: chr11:8232464-8232342 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 103

Conread position: 413-537
Cow position: chr11:13122026-13121902 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 413-537
Cow position: chr11:17891896-17892020 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 413-537
Cow position: chr11:34642244-34642120 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 107
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 414-537
Cow position: chr11:46700001-46700122 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 418-537
Cow position: chr11:77008032-77008154 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 424-537
Cow position: chr11:6729670-6729781 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 431-537
Cow position: chr11:67940910-67941015 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 432-537
Cow position: chr11:373136-373031 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 435-532
Cow position: chr11:696337-696240 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 85
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 440-536
Cow position: chr11:54058007-54058103 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 444-537
Cow position: chr11:76007400-76007492 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.