Cow genome map
| Conread name: | Pig1-92A03 |
| Conread position: | 286-532 |
| Cow position: | chr4:21250172-21249909 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 312-537 |
| Cow position: | chr4:20279218-20279450 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 313-535 |
| Cow position: | chr4:30671527-30671294 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 145 |
| Conread position: | 314-499 |
| Cow position: | chr4:12667453-12667267 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 314-537 |
| Cow position: | chr4:9845803-9846036 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 314-537 |
| Cow position: | chr4:31172561-31172795 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 314-537 |
| Cow position: | chr4:50769879-50769642 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 315-525 |
| Cow position: | chr4:5553902-5553685 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 315-537 |
| Cow position: | chr4:23311371-23311147 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 319-531 |
| Cow position: | chr4:54146572-54146350 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 319-537 |
| Cow position: | chr4:30131237-30131458 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 319-537 |
| Cow position: | chr4:62411769-62411975 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 323-534 |
| Cow position: | chr4:26373763-26373555 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 325-519 |
| Cow position: | chr4:60783940-60784134 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 325-528 |
| Cow position: | chr4:22115503-22115717 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 62, 209 |
| Conread position: | 325-529 |
| Cow position: | chr4:37880827-37881050 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 330-523 |
| Cow position: | chr4:7213681-7213489 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 330-524 |
| Cow position: | chr4:24497916-24497719 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 330-537 |
| Cow position: | chr4:23758706-23758926 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 330-537 |
| Cow position: | chr4:39767252-39767472 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 330-537 |
| Cow position: | chr4:48499741-48499939 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 332-537 |
| Cow position: | chr4:23166807-23167025 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 54, 126 |
| Conread position: | 333-518 |
| Cow position: | chr4:58576448-58576263 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 334-518 |
| Cow position: | chr4:23494828-23495026 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 334-530 |
| Cow position: | chr4:10992294-10992085 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 334-531 |
| Cow position: | chr4:7315136-7315330 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 100, 51 |
| Conread position: | 340-537 |
| Cow position: | chr4:9547887-9548075 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 342-522 |
| Cow position: | chr4:59833857-59834034 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 361-537 |
| Cow position: | chr4:24432926-24433102 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 380-534 |
| Cow position: | chr4:68795330-68795175 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 380-537 |
| Cow position: | chr4:22249485-22249326 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 380-537 |
| Cow position: | chr4:53752487-53752644 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 150 |
| Conread position: | 382-529 |
| Cow position: | chr4:5797929-5798081 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 382-530 |
| Cow position: | chr4:20066255-20066106 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 383-535 |
| Cow position: | chr4:19307225-19307374 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 383-537 |
| Cow position: | chr4:2121432-2121276 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 383-537 |
| Cow position: | chr4:52225972-52226126 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 384-537 |
| Cow position: | chr4:36813342-36813501 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 387-530 |
| Cow position: | chr4:44279967-44279820 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 387-530 |
| Cow position: | chr4:60030874-60031019 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 387-537 |
| Cow position: | chr4:36945224-36945071 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 388-532 |
| Cow position: | chr4:5913377-5913228 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 388-532 |
| Cow position: | chr4:65604499-65604355 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 125 |
| Conread position: | 388-535 |
| Cow position: | chr4:24415535-24415681 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 388-536 |
| Cow position: | chr4:18439596-18439447 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 388-537 |
| Cow position: | chr4:1799879-1800028 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 388-537 |
| Cow position: | chr4:27371889-27371740 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-537 |
| Cow position: | chr4:5002735-5002887 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 390-531 |
| Cow position: | chr4:10837409-10837265 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 71 |
| Conread position: | 390-532 |
| Cow position: | chr4:17304422-17304275 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 392-537 |
| Cow position: | chr4:59719583-59719725 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 396-535 |
| Cow position: | chr4:65406387-65406253 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 396-537 |
| Cow position: | chr4:21365387-21365525 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 396-537 |
| Cow position: | chr4:22528405-22528264 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-537 |
| Cow position: | chr4:24755546-24755686 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 396-537 |
| Cow position: | chr4:40623119-40622979 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 397-529 |
| Cow position: | chr4:40433923-40433787 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 397-537 |
| Cow position: | chr4:3267883-3267745 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 413-523 |
| Cow position: | chr4:59888621-59888512 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 413-524 |
| Cow position: | chr4:33681962-33682072 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 413-534 |
| Cow position: | chr4:35471317-35471437 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 413-537 |
| Cow position: | chr4:17478300-17478180 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 417-537 |
| Cow position: | chr4:63417698-63417578 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-537 |
| Cow position: | chr4:20161466-20161359 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 458-537 |
| Cow position: | chr4:37611242-37611163 (view UCSC Genome Browser custom track) |
| Alignm length: | 80 |
| Alignm identity: | 72 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.