Cow genome map
| Conread name: | Pig1-92A03 |
| Conread position: | 298-537 |
| Cow position: | chr5:18128002-18128242 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 309-537 |
| Cow position: | chr5:3649543-3649305 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 312-522 |
| Cow position: | chr5:13906784-13906995 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 85, 135 |
| Conread position: | 313-522 |
| Cow position: | chr5:44417433-44417220 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 313-526 |
| Cow position: | chr5:33265539-33265320 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 314-519 |
| Cow position: | chr5:26046254-26046461 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 314-537 |
| Cow position: | chr5:50425556-50425331 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 314-537 |
| Cow position: | chr5:51502929-51503160 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 314-537 |
| Cow position: | chr5:64398930-64399165 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 315-505 |
| Cow position: | chr5:68481156-68481347 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 319-505 |
| Cow position: | chr5:55989670-55989865 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 319-524 |
| Cow position: | chr5:24361455-24361656 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 319-537 |
| Cow position: | chr5:27615439-27615669 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 320-535 |
| Cow position: | chr5:67150089-67149863 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 321-531 |
| Cow position: | chr5:69773493-69773694 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 323-525 |
| Cow position: | chr5:17869614-17869830 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 187 |
| Conread position: | 323-530 |
| Cow position: | chr5:48143859-48143639 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 323-535 |
| Cow position: | chr5:13044466-13044257 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 325-525 |
| Cow position: | chr5:4631048-4631246 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 90, 59 |
| Conread position: | 325-537 |
| Cow position: | chr5:41605864-41605655 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 65, 98 |
| Conread position: | 326-524 |
| Cow position: | chr5:19905338-19905139 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 327-518 |
| Cow position: | chr5:72042154-72042342 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 327-537 |
| Cow position: | chr5:73526307-73526523 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 330-524 |
| Cow position: | chr5:18104208-18104004 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 198 |
| Conread position: | 330-531 |
| Cow position: | chr5:34184163-34184374 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 330-537 |
| Cow position: | chr5:23641055-23640860 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 330-537 |
| Cow position: | chr5:56385164-56385370 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 8 |
| Conread position: | 333-521 |
| Cow position: | chr5:46294728-46294548 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 333-523 |
| Cow position: | chr5:43110500-43110692 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 333-526 |
| Cow position: | chr5:61488172-61487966 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 333-530 |
| Cow position: | chr5:17028029-17028245 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 333-532 |
| Cow position: | chr5:17267958-17267740 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 333-535 |
| Cow position: | chr5:27411461-27411246 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 333-537 |
| Cow position: | chr5:18695114-18695317 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 333-537 |
| Cow position: | chr5:47681070-47680861 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 334-525 |
| Cow position: | chr5:26376488-26376689 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 334-531 |
| Cow position: | chr5:4927629-4927416 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 334-537 |
| Cow position: | chr5:41604562-41604780 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 345-505 |
| Cow position: | chr5:2267206-2267372 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 378-532 |
| Cow position: | chr5:1349799-1349640 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 380-524 |
| Cow position: | chr5:36024578-36024434 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 381-531 |
| Cow position: | chr5:22839474-22839329 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 381-537 |
| Cow position: | chr5:49567425-49567580 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 383-532 |
| Cow position: | chr5:63328894-63328742 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 383-537 |
| Cow position: | chr5:30332952-30333107 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 385-537 |
| Cow position: | chr5:54532989-54533141 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 386-534 |
| Cow position: | chr5:3752858-3753005 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 386-535 |
| Cow position: | chr5:34279602-34279452 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 387-530 |
| Cow position: | chr5:30978360-30978503 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-519 |
| Cow position: | chr5:6896121-6895988 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-535 |
| Cow position: | chr5:14154155-14154302 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-535 |
| Cow position: | chr5:40711433-40711292 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 388-537 |
| Cow position: | chr5:21531102-21530948 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 388-537 |
| Cow position: | chr5:23366761-23366608 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 388-537 |
| Cow position: | chr5:49656018-49655871 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 396-531 |
| Cow position: | chr5:36487683-36487544 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 396-532 |
| Cow position: | chr5:58343870-58344010 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 396-535 |
| Cow position: | chr5:20572065-20572203 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 396-535 |
| Cow position: | chr5:41636883-41637019 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 396-537 |
| Cow position: | chr5:39442309-39442453 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 397-523 |
| Cow position: | chr5:63188310-63188184 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-537 |
| Cow position: | chr5:1343837-1343700 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 397-537 |
| Cow position: | chr5:38629303-38629443 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 400-534 |
| Cow position: | chr5:58748786-58748923 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 402-531 |
| Cow position: | chr5:21195100-21194972 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 402-532 |
| Cow position: | chr5:36028126-36027995 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 413-532 |
| Cow position: | chr5:2819290-2819410 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 413-532 |
| Cow position: | chr5:21356857-21356738 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 413-535 |
| Cow position: | chr5:38936557-38936439 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 413-537 |
| Cow position: | chr5:3225943-3225823 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 417-532 |
| Cow position: | chr5:27293632-27293518 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 419-537 |
| Cow position: | chr5:3058958-3059076 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-537 |
| Cow position: | chr5:41907069-41907186 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-537 |
| Cow position: | chr5:17097759-17097867 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 432-537 |
| Cow position: | chr5:39753603-39753498 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-537 |
| Cow position: | chr5:75687270-75687169 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.