Cow genome map
| Conread name: | Pig1-92A03 |
| Conread position: | 310-537 |
| Cow position: | chr6:29412840-29412618 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 311-532 |
| Cow position: | chr6:2582801-2583025 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 311-532 |
| Cow position: | chr6:20255468-20255241 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 311-536 |
| Cow position: | chr6:20754366-20754132 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 312-537 |
| Cow position: | chr6:15997289-15997048 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 227 |
| Conread position: | 313-524 |
| Cow position: | chr6:37739121-37739331 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 314-514 |
| Cow position: | chr6:56860483-56860697 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 314-519 |
| Cow position: | chr6:57119004-57118789 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 314-522 |
| Cow position: | chr6:16634284-16634071 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 314-522 |
| Cow position: | chr6:59249748-59249544 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 314-527 |
| Cow position: | chr6:15025955-15025732 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 314-535 |
| Cow position: | chr6:19427387-19427619 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 314-537 |
| Cow position: | chr6:24557815-24558048 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 314-537 |
| Cow position: | chr6:47327132-47326909 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 314-537 |
| Cow position: | chr6:59588473-59588238 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 319-520 |
| Cow position: | chr6:20379531-20379325 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 319-537 |
| Cow position: | chr6:37612048-37612276 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 321-502 |
| Cow position: | chr6:7253194-7253005 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 321-530 |
| Cow position: | chr6:38914385-38914604 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 324-521 |
| Cow position: | chr6:7835857-7836069 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 324-532 |
| Cow position: | chr6:24649796-24650010 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 324-536 |
| Cow position: | chr6:9454232-9454453 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 327-535 |
| Cow position: | chr6:37053948-37054152 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 330-519 |
| Cow position: | chr6:55842208-55842011 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 333-520 |
| Cow position: | chr6:50271146-50270958 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 334-522 |
| Cow position: | chr6:28137602-28137793 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 335-537 |
| Cow position: | chr6:65871845-65872059 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 339-537 |
| Cow position: | chr6:54062618-54062836 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 343-522 |
| Cow position: | chr6:16781784-16781598 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 346-524 |
| Cow position: | chr6:35703225-35703051 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 380-531 |
| Cow position: | chr6:24622964-24622809 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 380-532 |
| Cow position: | chr6:28795345-28795504 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 381-524 |
| Cow position: | chr6:50318030-50317887 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 381-534 |
| Cow position: | chr6:24583212-24583064 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 382-535 |
| Cow position: | chr6:59496229-59496387 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 383-535 |
| Cow position: | chr6:55475266-55475424 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-537 |
| Cow position: | chr6:13718775-13718934 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 383-537 |
| Cow position: | chr6:32798857-32798702 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 385-535 |
| Cow position: | chr6:41041941-41042087 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 386-537 |
| Cow position: | chr6:54144322-54144473 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-526 |
| Cow position: | chr6:9026540-9026679 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-537 |
| Cow position: | chr6:827686-827537 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 388-537 |
| Cow position: | chr6:1890560-1890407 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 388-537 |
| Cow position: | chr6:30160342-30160488 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 388-537 |
| Cow position: | chr6:31425543-31425387 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 388-537 |
| Cow position: | chr6:50034710-50034559 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 388-537 |
| Cow position: | chr6:52002376-52002525 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 389-537 |
| Cow position: | chr6:10237355-10237504 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 389-537 |
| Cow position: | chr6:47858308-47858454 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 112 |
| Conread position: | 396-519 |
| Cow position: | chr6:16220035-16219913 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 396-537 |
| Cow position: | chr6:15782489-15782344 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 396-537 |
| Cow position: | chr6:18469200-18469063 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 397-529 |
| Cow position: | chr6:6367640-6367509 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 397-534 |
| Cow position: | chr6:32412608-32412472 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 397-537 |
| Cow position: | chr6:16733446-16733585 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 399-535 |
| Cow position: | chr6:8318132-8317998 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 402-531 |
| Cow position: | chr6:47192493-47192361 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 403-537 |
| Cow position: | chr6:6596608-6596741 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 404-520 |
| Cow position: | chr6:38895075-38894960 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 419-532 |
| Cow position: | chr6:47624830-47624717 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 424-537 |
| Cow position: | chr6:53264740-53264629 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 435-537 |
| Cow position: | chr6:36892262-36892163 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 440-537 |
| Cow position: | chr6:60423267-60423172 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.