Cow genome map
| Conread name: | Pig1-92A03 |
| Conread position: | 300-536 |
| Cow position: | chr7:55714004-55714242 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 311-537 |
| Cow position: | chr7:59245896-59246128 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 312-530 |
| Cow position: | chr7:26665624-26665403 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 312-534 |
| Cow position: | chr7:21197448-21197211 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 313-487 |
| Cow position: | chr7:62006241-62006061 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 313-524 |
| Cow position: | chr7:48289313-48289530 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 313-532 |
| Cow position: | chr7:61087372-61087597 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 314-522 |
| Cow position: | chr7:20176434-20176236 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 314-537 |
| Cow position: | chr7:8826752-8826986 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 314-537 |
| Cow position: | chr7:12755213-12754983 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 314-537 |
| Cow position: | chr7:19399745-19399504 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 314-537 |
| Cow position: | chr7:39603271-39603494 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 315-522 |
| Cow position: | chr7:44442715-44442505 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 315-524 |
| Cow position: | chr7:57729927-57729709 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 319-522 |
| Cow position: | chr7:49395328-49395129 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 319-527 |
| Cow position: | chr7:3322739-3322956 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 321-503 |
| Cow position: | chr7:46327825-46327629 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 324-524 |
| Cow position: | chr7:20355911-20356107 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 88 |
| Conread position: | 324-537 |
| Cow position: | chr7:22153104-22153333 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 193 |
| Conread position: | 325-523 |
| Cow position: | chr7:61308053-61308259 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 330-505 |
| Cow position: | chr7:10942900-10942723 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 330-524 |
| Cow position: | chr7:51884549-51884348 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 330-537 |
| Cow position: | chr7:8261070-8260861 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 330-537 |
| Cow position: | chr7:58773850-58774057 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 332-505 |
| Cow position: | chr7:53038303-53038132 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 333-532 |
| Cow position: | chr7:47771524-47771735 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 333-534 |
| Cow position: | chr7:37444829-37445034 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 160 |
| Conread position: | 333-537 |
| Cow position: | chr7:18858298-18858506 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 333-537 |
| Cow position: | chr7:47172756-47172542 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 333-537 |
| Cow position: | chr7:53005307-53005521 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 334-522 |
| Cow position: | chr7:49714781-49714971 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 334-525 |
| Cow position: | chr7:32769330-32769133 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 339-537 |
| Cow position: | chr7:35504527-35504714 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 341-537 |
| Cow position: | chr7:57311584-57311789 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-504 |
| Cow position: | chr7:12233001-12233158 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 380-521 |
| Cow position: | chr7:43215519-43215666 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 380-537 |
| Cow position: | chr7:14043987-14044145 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 381-520 |
| Cow position: | chr7:24033396-24033258 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 124 |
| Conread position: | 382-537 |
| Cow position: | chr7:17922295-17922451 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 383-531 |
| Cow position: | chr7:7507568-7507716 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 383-531 |
| Cow position: | chr7:25685027-25684878 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-537 |
| Cow position: | chr7:40192762-40192923 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 383-537 |
| Cow position: | chr7:41913684-41913526 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 386-536 |
| Cow position: | chr7:55076679-55076533 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 386-537 |
| Cow position: | chr7:26466763-26466914 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 388-522 |
| Cow position: | chr7:5249891-5249756 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-528 |
| Cow position: | chr7:26908012-26907874 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 388-531 |
| Cow position: | chr7:10099340-10099194 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 388-535 |
| Cow position: | chr7:11872586-11872434 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 388-537 |
| Cow position: | chr7:25445415-25445568 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 139 |
| Conread position: | 388-537 |
| Cow position: | chr7:25914468-25914316 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-537 |
| Cow position: | chr7:34441164-34441015 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 388-537 |
| Cow position: | chr7:51321758-51321904 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 388-537 |
| Cow position: | chr7:57260225-57260078 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 389-532 |
| Cow position: | chr7:12424565-12424714 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 389-532 |
| Cow position: | chr7:20108969-20108826 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 389-535 |
| Cow position: | chr7:30404548-30404405 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 389-536 |
| Cow position: | chr7:53743877-53743729 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 389-537 |
| Cow position: | chr7:32277561-32277709 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 391-523 |
| Cow position: | chr7:58354675-58354544 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 116 |
| Conread position: | 392-535 |
| Cow position: | chr7:64140114-64139975 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 393-526 |
| Cow position: | chr7:47874958-47874825 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-537 |
| Cow position: | chr7:43234417-43234272 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-529 |
| Cow position: | chr7:58490114-58490246 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-531 |
| Cow position: | chr7:664224-664088 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 397-536 |
| Cow position: | chr7:36746359-36746496 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 397-537 |
| Cow position: | chr7:19881015-19880873 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 398-530 |
| Cow position: | chr7:62102627-62102759 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 402-537 |
| Cow position: | chr7:41727981-41728114 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 411-537 |
| Cow position: | chr7:50401775-50401649 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 6 |
| Conread position: | 413-537 |
| Cow position: | chr7:10345419-10345295 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-537 |
| Cow position: | chr7:19423611-19423734 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 414-532 |
| Cow position: | chr7:31224351-31224241 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 419-535 |
| Cow position: | chr7:58703833-58703948 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 421-537 |
| Cow position: | chr7:37906305-37906189 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 436-537 |
| Cow position: | chr7:25857400-25857299 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-534 |
| Cow position: | chr7:34027843-34027935 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 440-537 |
| Cow position: | chr7:3134093-3133996 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 440-537 |
| Cow position: | chr7:62470869-62470964 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.