Cow genome map
| Conread name: | Pig1-92A03 |
| Conread position: | 294-537 |
| Cow position: | chrX:1978402-1978665 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 313-537 |
| Cow position: | chrX:25388315-25388088 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 43 |
| Conread position: | 313-537 |
| Cow position: | chrX:29874432-29874214 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 56 |
| Conread position: | 313-537 |
| Cow position: | chrX:36009996-36009755 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 314-504 |
| Cow position: | chrX:9161505-9161700 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 314-519 |
| Cow position: | chrX:12725658-12725868 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 314-524 |
| Cow position: | chrX:6479917-6480122 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 314-524 |
| Cow position: | chrX:17743985-17744201 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 314-533 |
| Cow position: | chrX:32743455-32743686 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 314-537 |
| Cow position: | chrX:6563441-6563677 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 314-537 |
| Cow position: | chrX:17042613-17042840 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 319-532 |
| Cow position: | chrX:28787278-28787499 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 320-534 |
| Cow position: | chrX:6203468-6203696 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 323-520 |
| Cow position: | chrX:2029319-2029526 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 129 |
| Conread position: | 327-504 |
| Cow position: | chrX:6643217-6643392 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 328-537 |
| Cow position: | chrX:39415434-39415211 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 330-519 |
| Cow position: | chrX:39097455-39097649 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 330-527 |
| Cow position: | chrX:16284009-16283795 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 330-535 |
| Cow position: | chrX:38999790-39000004 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 330-536 |
| Cow position: | chrX:40789144-40789360 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 330-537 |
| Cow position: | chrX:25338119-25338345 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 330-537 |
| Cow position: | chrX:36840811-36841020 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 332-530 |
| Cow position: | chrX:26619171-26618967 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 332-537 |
| Cow position: | chrX:5046963-5046759 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 333-537 |
| Cow position: | chrX:19678329-19678117 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 333-537 |
| Cow position: | chrX:41083862-41084074 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 334-508 |
| Cow position: | chrX:7345024-7345212 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 334-525 |
| Cow position: | chrX:11562094-11562292 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 114 |
| Conread position: | 334-537 |
| Cow position: | chrX:22326057-22326277 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 335-537 |
| Cow position: | chrX:630369-630152 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 338-537 |
| Cow position: | chrX:34470674-34470870 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 340-528 |
| Cow position: | chrX:41560310-41560122 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 158 |
| Conread position: | 340-537 |
| Cow position: | chrX:37760829-37761028 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 341-535 |
| Cow position: | chrX:18216231-18216424 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 143, 87 |
| Conread position: | 358-537 |
| Cow position: | chrX:6367814-6367619 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 360-527 |
| Cow position: | chrX:583012-583183 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 380-532 |
| Cow position: | chrX:25713791-25713948 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 380-537 |
| Cow position: | chrX:21664723-21664563 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 381-537 |
| Cow position: | chrX:2300922-2301082 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 381-537 |
| Cow position: | chrX:21640427-21640582 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 381-537 |
| Cow position: | chrX:27287736-27287579 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 382-520 |
| Cow position: | chrX:25419157-25419013 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 383-530 |
| Cow position: | chrX:39545977-39545835 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 383-534 |
| Cow position: | chrX:27176314-27176159 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 139 |
| Conread position: | 383-537 |
| Cow position: | chrX:6656385-6656540 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 385-531 |
| Cow position: | chrX:46083971-46084124 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 387-519 |
| Cow position: | chrX:29032417-29032548 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 387-537 |
| Cow position: | chrX:7425473-7425623 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-537 |
| Cow position: | chrX:18456408-18456558 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 388-503 |
| Cow position: | chrX:20011415-20011532 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-532 |
| Cow position: | chrX:29408019-29407869 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 388-537 |
| Cow position: | chrX:9539330-9539479 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 388-537 |
| Cow position: | chrX:9839232-9839381 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 388-537 |
| Cow position: | chrX:10302343-10302499 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-537 |
| Cow position: | chrX:16419154-16419304 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 388-537 |
| Cow position: | chrX:26940501-26940360 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 388-537 |
| Cow position: | chrX:31602661-31602815 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 388-537 |
| Cow position: | chrX:47744095-47744245 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 389-531 |
| Cow position: | chrX:30980130-30979984 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 389-532 |
| Cow position: | chrX:34355961-34355823 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 391-537 |
| Cow position: | chrX:33802997-33802850 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 396-510 |
| Cow position: | chrX:16514249-16514136 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 396-527 |
| Cow position: | chrX:12304573-12304709 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-524 |
| Cow position: | chrX:23179266-23179134 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 404-532 |
| Cow position: | chrX:18142433-18142302 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 405-537 |
| Cow position: | chrX:4446731-4446862 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 407-537 |
| Cow position: | chrX:16291996-16291863 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 413-532 |
| Cow position: | chrX:27771543-27771425 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 413-532 |
| Cow position: | chrX:43980769-43980888 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-537 |
| Cow position: | chrX:159726-159602 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-531 |
| Cow position: | chrX:10289594-10289476 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 423-537 |
| Cow position: | chrX:2648168-2648054 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 433-537 |
| Cow position: | chrX:31273256-31273360 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 434-537 |
| Cow position: | chrX:46028707-46028604 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-537 |
| Cow position: | chrX:488739-488835 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 446-537 |
| Cow position: | chrX:3951107-3951198 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-537 |
| Cow position: | chrX:33585562-33585649 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.