Cow genome map
| Conread name: | Pig2-102I04 | 
| Conread position: | 1-121 | 
| Cow position: | chr3:48468227-48468347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 2-131 | 
| Cow position: | chr3:84601705-84601576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-114 | 
| Cow position: | chr3:70632200-70632311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-120 | 
| Cow position: | chr3:42355720-42355834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 3-120 | 
| Cow position: | chr3:76300827-76300944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-121 | 
| Cow position: | chr3:3556601-3556719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-121 | 
| Cow position: | chr3:14558813-14558931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-121 | 
| Cow position: | chr3:29943912-29944031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 3-122 | 
| Cow position: | chr3:68624273-68624391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 3-124 | 
| Cow position: | chr3:2648454-2648334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 3-124 | 
| Cow position: | chr3:43091147-43091264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 44, 37 | 
| Conread position: | 3-124 | 
| Cow position: | chr3:59947721-59947842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 3-130 | 
| Cow position: | chr3:22899677-22899551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 3-130 | 
| Cow position: | chr3:59040625-59040751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 122, 14 | 
| Conread position: | 3-131 | 
| Cow position: | chr3:11281822-11281950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 4-121 | 
| Cow position: | chr3:52487677-52487800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 4-121 | 
| Cow position: | chr3:58452099-58452216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 4-121 | 
| Cow position: | chr3:58497714-58497831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 4-131 | 
| Cow position: | chr3:6547480-6547607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr3:62312853-62312964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-116 | 
| Cow position: | chr3:62370112-62370223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 112 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-117 | 
| Cow position: | chr3:56754478-56754368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 5-119 | 
| Cow position: | chr3:67942478-67942364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 31, 36 | 
| Conread position: | 5-120 | 
| Cow position: | chr3:210377-210492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-120 | 
| Cow position: | chr3:20888606-20888491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-120 | 
| Cow position: | chr3:59271888-59272001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 5-120 | 
| Cow position: | chr3:63069308-63069191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:3656572-3656686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 21, 93 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:11254110-11253994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:18700053-18699937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:55318839-55318727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:59317758-59317871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 31, 44 | 
| Conread position: | 5-121 | 
| Cow position: | chr3:59392070-59391954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-122 | 
| Cow position: | chr3:44960000-44960117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-122 | 
| Cow position: | chr3:70756584-70756467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:1011546-1011666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 33, 20 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:9663114-9662995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:15973624-15973744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:22078133-22078252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:43389070-43388951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:48900275-48900156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:51150186-51150304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 33, 93 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:55106091-55105972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:72027694-72027813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:76138515-76138633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 5-124 | 
| Cow position: | chr3:80910653-80910771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 5-127 | 
| Cow position: | chr3:55730411-55730288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 118, 0 | 
| Conread position: | 5-127 | 
| Cow position: | chr3:76168574-76168452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-129 | 
| Cow position: | chr3:635235-635357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 5-129 | 
| Cow position: | chr3:23920371-23920247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-129 | 
| Cow position: | chr3:60371040-60371163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 5-129 | 
| Cow position: | chr3:72342303-72342427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-130 | 
| Cow position: | chr3:21866980-21866858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:33453-33324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:3453637-3453763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:15443671-15443545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:18764159-18764286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:29234623-29234496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 41, 102 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:42483986-42484108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:61023965-61023840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:62789897-62789769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:68303372-68303499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:72649933-72649806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 24, 120 | 
| Conread position: | 5-131 | 
| Cow position: | chr3:82195542-82195666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 120, 27 | 
| Conread position: | 6-124 | 
| Cow position: | chr3:58562757-58562875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 16, 32 | 
| Conread position: | 7-131 | 
| Cow position: | chr3:17952652-17952772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 9-130 | 
| Cow position: | chr3:19044709-19044588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 9-131 | 
| Cow position: | chr3:25702280-25702149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 9-132 | 
| Cow position: | chr3:25735844-25735721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-120 | 
| Cow position: | chr3:63860548-63860440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 10-124 | 
| Cow position: | chr3:35883872-35883758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-124 | 
| Cow position: | chr3:59926692-59926807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 10-129 | 
| Cow position: | chr3:31554996-31555114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 59, 22 | 
| Conread position: | 10-129 | 
| Cow position: | chr3:44218828-44218947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-130 | 
| Cow position: | chr3:53604683-53604564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 10-131 | 
| Cow position: | chr3:9718189-9718068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-131 | 
| Cow position: | chr3:61680377-61680498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-131 | 
| Cow position: | chr3:66563845-66563966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 10-131 | 
| Cow position: | chr3:72626683-72626561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 11-121 | 
| Cow position: | chr3:42933544-42933654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 11-123 | 
| Cow position: | chr3:12090736-12090850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 11-124 | 
| Cow position: | chr3:4071708-4071595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 11-124 | 
| Cow position: | chr3:24468321-24468210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 11-124 | 
| Cow position: | chr3:29334349-29334237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 11-130 | 
| Cow position: | chr3:24304570-24304447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 38, 117 | 
| Conread position: | 11-130 | 
| Cow position: | chr3:53910172-53910286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 11-131 | 
| Cow position: | chr3:8147462-8147342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 11, 60 | 
| Conread position: | 11-131 | 
| Cow position: | chr3:22888953-22888833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 27, 63 | 
| Conread position: | 11-131 | 
| Cow position: | chr3:23733408-23733290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 64, 88 | 
| Conread position: | 11-131 | 
| Cow position: | chr3:52147380-52147261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 12-124 | 
| Cow position: | chr3:21694289-21694401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 26, 62 | 
| Conread position: | 12-130 | 
| Cow position: | chr3:7408500-7408618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 13-120 | 
| Cow position: | chr3:13882456-13882348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 109 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 13-131 | 
| Cow position: | chr3:30463112-30462996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 14-124 | 
| Cow position: | chr3:70333905-70333795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 14-124 | 
| Cow position: | chr3:79893431-79893322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 14-130 | 
| Cow position: | chr3:986079-986195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 15-131 | 
| Cow position: | chr3:2636869-2636753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 15-131 | 
| Cow position: | chr3:51153111-51153225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 20-131 | 
| Cow position: | chr3:68648246-68648358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 21-124 | 
| Cow position: | chr3:29385940-29386043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 104 | 
| Alignm identity: | 86 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 32-129 | 
| Cow position: | chr3:33460517-33460420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 98 | 
| Alignm identity: | 83 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 32-129 | 
| Cow position: | chr3:72910993-72910896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 98 | 
| Alignm identity: | 81 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
Show alignments to all cow chromosomes.
