Cow genome map

Conread name: Pig2-102I04

Conread position: 1-121
Cow position: chr3:48468227-48468347 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-131
Cow position: chr3:84601705-84601576 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-114
Cow position: chr3:70632200-70632311 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-120
Cow position: chr3:42355720-42355834 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 3-120
Cow position: chr3:76300827-76300944 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-121
Cow position: chr3:3556601-3556719 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-121
Cow position: chr3:14558813-14558931 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-121
Cow position: chr3:29943912-29944031 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 3-122
Cow position: chr3:68624273-68624391 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 3-124
Cow position: chr3:2648454-2648334 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 3-124
Cow position: chr3:43091147-43091264 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 37

Conread position: 3-124
Cow position: chr3:59947721-59947842 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-130
Cow position: chr3:22899677-22899551 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 3-130
Cow position: chr3:59040625-59040751 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 122, 14

Conread position: 3-131
Cow position: chr3:11281822-11281950 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 4-121
Cow position: chr3:52487677-52487800 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 4-121
Cow position: chr3:58452099-58452216 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 4-121
Cow position: chr3:58497714-58497831 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-131
Cow position: chr3:6547480-6547607 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-116
Cow position: chr3:62312853-62312964 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-116
Cow position: chr3:62370112-62370223 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-117
Cow position: chr3:56754478-56754368 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 5-119
Cow position: chr3:67942478-67942364 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 36

Conread position: 5-120
Cow position: chr3:210377-210492 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-120
Cow position: chr3:20888606-20888491 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-120
Cow position: chr3:59271888-59272001 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 5-120
Cow position: chr3:63069308-63069191 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 5-121
Cow position: chr3:3656572-3656686 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 93

Conread position: 5-121
Cow position: chr3:11254110-11253994 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chr3:18700053-18699937 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chr3:55318839-55318727 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 5-121
Cow position: chr3:59317758-59317871 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 44

Conread position: 5-121
Cow position: chr3:59392070-59391954 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-122
Cow position: chr3:44960000-44960117 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-122
Cow position: chr3:70756584-70756467 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:1011546-1011666 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 20

Conread position: 5-124
Cow position: chr3:9663114-9662995 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:15973624-15973744 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 5-124
Cow position: chr3:22078133-22078252 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:43389070-43388951 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:48900275-48900156 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:51150186-51150304 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 93

Conread position: 5-124
Cow position: chr3:55106091-55105972 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:72027694-72027813 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr3:76138515-76138633 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 5-124
Cow position: chr3:80910653-80910771 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 5-127
Cow position: chr3:55730411-55730288 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 5-127
Cow position: chr3:76168574-76168452 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-129
Cow position: chr3:635235-635357 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 5-129
Cow position: chr3:23920371-23920247 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-129
Cow position: chr3:60371040-60371163 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 5-129
Cow position: chr3:72342303-72342427 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-130
Cow position: chr3:21866980-21866858 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 5-131
Cow position: chr3:33453-33324 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 5-131
Cow position: chr3:3453637-3453763 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr3:15443671-15443545 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr3:18764159-18764286 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 5-131
Cow position: chr3:29234623-29234496 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 102

Conread position: 5-131
Cow position: chr3:42483986-42484108 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 5-131
Cow position: chr3:61023965-61023840 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 112, 0

Conread position: 5-131
Cow position: chr3:62789897-62789769 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 5-131
Cow position: chr3:68303372-68303499 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 5-131
Cow position: chr3:72649933-72649806 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 120

Conread position: 5-131
Cow position: chr3:82195542-82195666 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 120, 27

Conread position: 6-124
Cow position: chr3:58562757-58562875 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 32

Conread position: 7-131
Cow position: chr3:17952652-17952772 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 9-130
Cow position: chr3:19044709-19044588 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 9-131
Cow position: chr3:25702280-25702149 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 9-132
Cow position: chr3:25735844-25735721 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-120
Cow position: chr3:63860548-63860440 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 10-124
Cow position: chr3:35883872-35883758 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-124
Cow position: chr3:59926692-59926807 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 10-129
Cow position: chr3:31554996-31555114 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 22

Conread position: 10-129
Cow position: chr3:44218828-44218947 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 10-130
Cow position: chr3:53604683-53604564 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 10-131
Cow position: chr3:9718189-9718068 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chr3:61680377-61680498 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chr3:66563845-66563966 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chr3:72626683-72626561 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 11-121
Cow position: chr3:42933544-42933654 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 11-123
Cow position: chr3:12090736-12090850 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 11-124
Cow position: chr3:4071708-4071595 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 11-124
Cow position: chr3:24468321-24468210 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 11-124
Cow position: chr3:29334349-29334237 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 11-130
Cow position: chr3:24304570-24304447 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 117

Conread position: 11-130
Cow position: chr3:53910172-53910286 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 11-131
Cow position: chr3:8147462-8147342 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 60

Conread position: 11-131
Cow position: chr3:22888953-22888833 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 63

Conread position: 11-131
Cow position: chr3:23733408-23733290 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 88

Conread position: 11-131
Cow position: chr3:52147380-52147261 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 63

Conread position: 12-124
Cow position: chr3:21694289-21694401 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 62

Conread position: 12-130
Cow position: chr3:7408500-7408618 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-120
Cow position: chr3:13882456-13882348 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 13-131
Cow position: chr3:30463112-30462996 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 14-124
Cow position: chr3:70333905-70333795 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 14-124
Cow position: chr3:79893431-79893322 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 14-130
Cow position: chr3:986079-986195 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 15-131
Cow position: chr3:2636869-2636753 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 15-131
Cow position: chr3:51153111-51153225 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 20-131
Cow position: chr3:68648246-68648358 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 21-124
Cow position: chr3:29385940-29386043 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 32-129
Cow position: chr3:33460517-33460420 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 32-129
Cow position: chr3:72910993-72910896 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.