Cow genome map

Conread name: Pig2-102I04

Conread position: 1-122
Cow position: chr5:35247006-35246884 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 3-119
Cow position: chr5:54555081-54554965 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 31, 38

Conread position: 3-124
Cow position: chr5:36868841-36868962 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 91, 106

Conread position: 3-128
Cow position: chr5:42064311-42064436 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-130
Cow position: chr5:26097395-26097522 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 109, 37

Conread position: 3-131
Cow position: chr5:62543945-62544069 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 5-113
Cow position: chr5:53980646-53980538 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-119
Cow position: chr5:57526821-57526707 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-119
Cow position: chr5:62011791-62011902 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 5-120
Cow position: chr5:24108952-24108837 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-120
Cow position: chr5:37572450-37572335 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-120
Cow position: chr5:41935549-41935434 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chr5:58825-58708 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 5-121
Cow position: chr5:26149142-26149257 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 5-121
Cow position: chr5:29256601-29256486 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 5-121
Cow position: chr5:43434896-43434780 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chr5:43839891-43839775 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chr5:49821536-49821653 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 5-121
Cow position: chr5:51012108-51012222 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 5-121
Cow position: chr5:56643175-56643290 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 44

Conread position: 5-121
Cow position: chr5:58519308-58519194 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 5-121
Cow position: chr5:63763772-63763887 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 5-121
Cow position: chr5:65140407-65140522 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 5-124
Cow position: chr5:7057294-7057172 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 5-124
Cow position: chr5:34347627-34347508 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr5:40122502-40122383 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr5:40740221-40740101 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 5-124
Cow position: chr5:45854605-45854726 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 5-124
Cow position: chr5:50723154-50723273 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr5:54340874-54340991 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 5-124
Cow position: chr5:55943608-55943493 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 5-124
Cow position: chr5:58487483-58487598 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 5-124
Cow position: chr5:61593372-61593489 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 5-124
Cow position: chr5:62996065-62996184 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chr5:72867158-72867277 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-128
Cow position: chr5:50703941-50703818 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-129
Cow position: chr5:60514921-60514795 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 5-130
Cow position: chr5:17062973-17062849 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 5-131
Cow position: chr5:12902025-12902151 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr5:35229035-35228912 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 5-131
Cow position: chr5:44582661-44582528 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 5-131
Cow position: chr5:44810131-44810005 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr5:55783855-55783729 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr5:55949571-55949446 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 5-131
Cow position: chr5:57399145-57399019 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-131
Cow position: chr5:57447558-57447432 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 6-114
Cow position: chr5:56428465-56428357 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-121
Cow position: chr5:17987786-17987671 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 96, 101

Conread position: 6-121
Cow position: chr5:35208370-35208485 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 6-121
Cow position: chr5:56624408-56624292 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 6-121
Cow position: chr5:61049441-61049556 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-137
Cow position: chr5:57687471-57687342 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-124
Cow position: chr5:59662946-59662832 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 9-125
Cow position: chr5:35235577-35235461 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-131
Cow position: chr5:55756303-55756181 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 9-131
Cow position: chr5:74690142-74690020 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 10-117
Cow position: chr5:59517145-59517040 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 10-120
Cow position: chr5:20128165-20128275 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-121
Cow position: chr5:13471221-13471331 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 10-121
Cow position: chr5:32672722-32672611 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 10-121
Cow position: chr5:41226893-41226782 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 10-121
Cow position: chr5:45337308-45337198 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 10-124
Cow position: chr5:55749925-55749811 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-124
Cow position: chr5:55965781-55965667 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chr5:25446998-25447119 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 10

Conread position: 10-131
Cow position: chr5:71445503-71445625 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 11-120
Cow position: chr5:14550470-14550361 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 11-124
Cow position: chr5:30492680-30492566 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 11-124
Cow position: chr5:43611812-43611924 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 11-129
Cow position: chr5:32975446-32975327 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 11-131
Cow position: chr5:59335884-59336005 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 11-133
Cow position: chr5:54712956-54712833 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 111, 0

Conread position: 12-113
Cow position: chr5:54753136-54753035 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 12-124
Cow position: chr5:53824999-53824888 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 12-131
Cow position: chr5:7012736-7012617 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 12-131
Cow position: chr5:47870937-47870822 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 13-124
Cow position: chr5:43815701-43815591 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 13-127
Cow position: chr5:39937231-39937344 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 13-130
Cow position: chr5:19561332-19561214 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 13-130
Cow position: chr5:47888615-47888499 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 7

Conread position: 14-139
Cow position: chr5:66659626-66659755 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 17-121
Cow position: chr5:56578819-56578923 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 17-131
Cow position: chr5:12761001-12760889 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 19-121
Cow position: chr5:41757733-41757835 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-124
Cow position: chr5:17026322-17026420 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 32-131
Cow position: chr5:28456113-28456013 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 0

Show alignments to all cow chromosomes.