Cow genome map

Conread name: Pig2-102I04

Conread position: 1-119
Cow position: chrX:30962772-30962653 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 1-124
Cow position: chrX:4632750-4632627 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-121
Cow position: chrX:17498429-17498547 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-121
Cow position: chrX:24170623-24170501 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-121
Cow position: chrX:37867539-37867657 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-124
Cow position: chrX:36866279-36866400 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-126
Cow position: chrX:37717828-37717951 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 3-130
Cow position: chrX:1938121-1938246 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 3-130
Cow position: chrX:8642151-8642278 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 5-115
Cow position: chrX:44995608-44995718 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 5-119
Cow position: chrX:37955956-37956067 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 5-121
Cow position: chrX:1122438-1122323 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 5-121
Cow position: chrX:1960316-1960201 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 5-121
Cow position: chrX:1996343-1996227 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:2314510-2314394 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:10479858-10479974 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:11670795-11670911 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:12290828-12290942 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 5-121
Cow position: chrX:17231844-17231961 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 5-121
Cow position: chrX:19356572-19356688 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 101
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:20339785-20339671 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 5-121
Cow position: chrX:26367594-26367478 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:26881971-26881855 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:27175107-27175224 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 5-121
Cow position: chrX:29478832-29478946 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 5-121
Cow position: chrX:35285282-35285398 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:42247073-42246957 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 100
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 5-121
Cow position: chrX:46587931-46588044 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 5-124
Cow position: chrX:24331885-24332004 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chrX:40337019-40337138 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 5-124
Cow position: chrX:41790320-41790200 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 5-124
Cow position: chrX:41941732-41941850 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 5-124
Cow position: chrX:44040285-44040404 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-125
Cow position: chrX:11602376-11602259 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 5-127
Cow position: chrX:51792-51672 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 5-127
Cow position: chrX:42506840-42506716 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 5-128
Cow position: chrX:41435440-41435311 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 5-130
Cow position: chrX:40680723-40680848 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-130
Cow position: chrX:42159050-42159176 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 5-131
Cow position: chrX:27261301-27261424 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 5-131
Cow position: chrX:28167088-28167213 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 5-131
Cow position: chrX:33678364-33678236 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 5-131
Cow position: chrX:34554832-34554960 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 5-131
Cow position: chrX:39887105-39886978 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 5-131
Cow position: chrX:42836290-42836414 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 5-131
Cow position: chrX:48574248-48574121 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 120

Conread position: 5-146
Cow position: chrX:6559348-6559205 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 6-121
Cow position: chrX:26979681-26979567 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 90

Conread position: 9-121
Cow position: chrX:25815788-25815675 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 6

Conread position: 9-124
Cow position: chrX:37867366-37867481 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 9-124
Cow position: chrX:41194018-41194132 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 5

Conread position: 9-127
Cow position: chrX:17524271-17524153 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 9-131
Cow position: chrX:27508913-27508789 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 9-131
Cow position: chrX:30958843-30958962 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 10-116
Cow position: chrX:29723865-29723970 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 10-124
Cow position: chrX:6855973-6856087 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 98

Conread position: 10-124
Cow position: chrX:27442425-27442311 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-124
Cow position: chrX:33466738-33466849 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 28

Conread position: 10-124
Cow position: chrX:34398670-34398556 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-124
Cow position: chrX:35409865-35409979 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 10-124
Cow position: chrX:44054916-44055030 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-131
Cow position: chrX:10415139-10415018 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 11-113
Cow position: chrX:28837000-28837100 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 11-119
Cow position: chrX:13347383-13347491 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 11-121
Cow position: chrX:1175875-1175766 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 11-121
Cow position: chrX:33654729-33654619 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 11-124
Cow position: chrX:597364-597251 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 11-124
Cow position: chrX:4109299-4109412 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-127
Cow position: chrX:25035267-25035150 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 11-130
Cow position: chrX:4092039-4092155 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 11-130
Cow position: chrX:22552864-22552747 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 84, 0

Conread position: 11-130
Cow position: chrX:31489635-31489755 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 11-130
Cow position: chrX:34193966-34193847 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-131
Cow position: chrX:876732-876613 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 0

Conread position: 11-131
Cow position: chrX:9451458-9451575 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 57

Conread position: 11-131
Cow position: chrX:13923979-13924095 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 11-131
Cow position: chrX:16532621-16532743 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 93, 115

Conread position: 11-131
Cow position: chrX:31250503-31250624 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 11-145
Cow position: chrX:19162016-19161881 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 12-124
Cow position: chrX:12095656-12095544 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 12-124
Cow position: chrX:42220586-42220474 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 12-124
Cow position: chrX:43150547-43150658 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 12-129
Cow position: chrX:23185222-23185105 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 12-133
Cow position: chrX:36283455-36283576 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-121
Cow position: chrX:8759739-8759847 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-122
Cow position: chrX:42449897-42449788 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-122
Cow position: chrX:44192327-44192217 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 13-124
Cow position: chrX:42760369-42760480 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-127
Cow position: chrX:23335859-23335745 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-131
Cow position: chrX:28106964-28107079 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 14-130
Cow position: chrX:18196116-18196233 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 14-130
Cow position: chrX:32590288-32590172 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 14-131
Cow position: chrX:20168674-20168789 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 84

Conread position: 15-124
Cow position: chrX:13122062-13122171 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 36-138
Cow position: chrX:31334515-31334413 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.