Cow genome map
| Conread name: | Pig2-110L12 |
| Conread position: | 2-168 |
| Cow position: | chr5:3549749-3549918 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 2-168 |
| Cow position: | chr5:18289163-18288995 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 2-180 |
| Cow position: | chr5:31144755-31144933 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 139, 121 |
| Conread position: | 2-194 |
| Cow position: | chr5:42050584-42050391 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 2-196 |
| Cow position: | chr5:50821815-50821620 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 160 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 2-204 |
| Cow position: | chr5:30629127-30629324 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 2-205 |
| Cow position: | chr5:56014763-56014567 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 139, 74 |
| Conread position: | 2-212 |
| Cow position: | chr5:45472314-45472091 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 171 |
| Conread position: | 2-221 |
| Cow position: | chr5:24996190-24996409 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 2-222 |
| Cow position: | chr5:6670161-6670382 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 67, 89 |
| Conread position: | 2-224 |
| Cow position: | chr5:57074299-57074521 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 2-225 |
| Cow position: | chr5:7044673-7044898 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 2-225 |
| Cow position: | chr5:20783652-20783437 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 2-225 |
| Cow position: | chr5:21617490-21617268 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 55 |
| Conread position: | 2-225 |
| Cow position: | chr5:30302927-30302708 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 2-225 |
| Cow position: | chr5:34916163-34915954 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 2-225 |
| Cow position: | chr5:35826634-35826403 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 139, 59 |
| Conread position: | 2-225 |
| Cow position: | chr5:41545861-41546081 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 2-225 |
| Cow position: | chr5:42744818-42744606 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 2-225 |
| Cow position: | chr5:43474877-43474660 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 2-225 |
| Cow position: | chr5:45845659-45845883 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 2-225 |
| Cow position: | chr5:65941218-65941441 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 2-225 |
| Cow position: | chr5:67243953-67243738 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 3-203 |
| Cow position: | chr5:65967700-65967897 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 3-225 |
| Cow position: | chr5:11229641-11229861 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 3-225 |
| Cow position: | chr5:38833154-38832932 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 66 |
| Conread position: | 4-225 |
| Cow position: | chr5:26467656-26467432 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 8-180 |
| Cow position: | chr5:21964315-21964140 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 8-212 |
| Cow position: | chr5:62826726-62826928 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 9-225 |
| Cow position: | chr5:47888686-47888902 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 9-225 |
| Cow position: | chr5:72150275-72150064 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 12-225 |
| Cow position: | chr5:65601479-65601273 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 13-212 |
| Cow position: | chr5:19778557-19778758 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 15-225 |
| Cow position: | chr5:34184249-34184032 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 31-225 |
| Cow position: | chr5:29212947-29212761 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 36-224 |
| Cow position: | chr5:55756426-55756626 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 44-279 |
| Cow position: | chr5:47601810-47601574 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 46-225 |
| Cow position: | chr5:39094545-39094366 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 53-213 |
| Cow position: | chr5:29980004-29980161 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 65-211 |
| Cow position: | chr5:2332540-2332687 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.